KEGG   Cucurbita pepo subsp. pepo (vegetable marrow): 111779347
Entry
111779347         CDS       T05351                                 
Name
(RefSeq) WD repeat-containing protein 43
  KO
K14546  U3 small nucleolar RNA-associated protein 5
Organism
cpep  Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03008  Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:cpep00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    111779347
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:cpep03009]
    111779347
Ribosome biogenesis [BR:cpep03009]
 Eukaryotic type
  90S particles
   U3 small nucleolar RNA-associated proteins
    111779347
SSDB
Motif
Pfam: WD40 Beta-prop_IFT122_1st Beta-prop_WDR5 WD40_Prp19 Beta-prop_THOC3 Beta-prop_WDR3_1st Beta-prop_EML_2 Beta-prop_WDR36-Utp21_1st WD40_CDC20-Fz WD40_WDHD1_1st WDR55 Beta-prop_WDR90_POC16_2nd Beta-prop_WDR3_2nd Beta-prop_WDR36-Utp21_2nd Utp12 WD40_MABP1-WDR62_1st ANAPC4_WD40 Beta-prop_TEP1_2nd WDR90_beta-prop_4th Beta-prop_EML EIF3I Beta-prop_WDR75_1st WD40_MABP1-WDR62_2nd CFAP251_N Beta-prop_Vps41 Beta-prop_ACSF4 WD40_Gbeta Beta-prop_VPS8 Beta-prop_HPS5 Beta_prop_At2g24240 PQQ_2 Beta-prop_WDR19_1st
Other DBs
NCBI-GeneID: 111779347
NCBI-ProteinID: XP_023515262
LinkDB
Position
LG17:287368..292179
AA seq 629 aa
MASSSIRDLLTSFSPDLHLFAISSGDGRIKIWDTLKGQIQTEFADFFTTDSTSILTKSGK
GHLSVDYKCMKWLSLEKKRKRKRQCSLLLLGTGSGDVMALDVAAGELKWKISDCHPGGVA
TISFPTHGSCIYTAGADGMLCEIDSVTGSLLRKFKASTKAISCISVSPDGKKIATAASQM
KIFNCSDHKKIQKFSGHPGAVRCMVFTKDGKYILSSGVGERYIVVWSLGEEKKQSASCVL
AMEHPAIFVDSRRSDGGGVDETALYVLAISEIGVCYLWYGQNLEELRSVKPTKVLISNND
ISSKSKKRVTPSIYAAQFQGIPKSGSGQVFLAHGLLVKPSFQNVVVHSGTDITLNSSNDG
ILLPSHSVGKSTKGLDVQGGVVALDRANAEDALRPIPKVFDSQEKRTLYHNLHVDRDDVM
TELVDSGSQVEDVVGLEDSAAVCLEDKLRSLGILDTDDHTYESILKSAIFKGIDLEANMS
QKKLREAVLSLAPGDACKLLGNLVSIWQSRLRSGKNVLPWIYSLLLNHNQHILSQEQSTQ
ILDSLFKITKSKETAVQPLLQLSGRLQLVLAQIERASANKTDQTVRHGPEIDGGESSNDE
DEGKDDEEVDDVLYGEEEYESELSSDNEN
NT seq 1890 nt   +upstreamnt  +downstreamnt
atggcgtcgtcgagtatcagagatctgttaacatcttttagtcctgatttgcatttgttt
gccatcagctcgggggatggtcgtatcaagatatgggacacgttgaaaggtcagatacag
acggagtttgcagatttcttcacaaccgattcaacgagcatactaacgaaatcaggaaaa
gggcatctatctgttgattataaatgcatgaaatggttgtcattggagaaaaagagaaaa
agaaagcgccaatgttcgttgttgttgttaggaactggtagtggtgatgttatggctctt
gatgtagcagctggggaattgaagtggaaaataagtgattgtcatcctgggggtgttgct
acaatttcatttcctacacacggttcgtgcatttatactgctggtgccgatggaatgcta
tgcgaaattgattctgtgacgggaagcctgttgaggaagttcaaggcttctacaaaggca
atatcctgtatttctgtttctccagatggaaagaaaatagcaactgcagcctcgcaaatg
aagattttcaattgttccgatcataaaaagatacagaagttttccgggcatcctggagct
gttcgatgtatggtctttaccaaagatggaaaatacattctttcgtccggggttggtgaa
aggtatatcgttgtttggagtttaggcgaagagaaaaagcaatcagctagttgtgttctc
gcaatggagcaccctgccatcttcgtggacagcaggcgctcggatggtggtggagttgat
gaaactgctctgtacgttttggctatatcagaaattggtgtttgttatttatggtatgga
cagaatctcgaagagttacgaagtgtcaagcctactaaagtattgatatctaacaatgat
atttcctccaagagtaaaaaacgggtaacaccctcgatttatgctgcacaatttcaagga
attccgaaatctgggtcgggccaggttttccttgctcatggattgctagtgaaaccttca
tttcaaaatgtcgtggtgcactccggtactgacataactttaaacagctccaatgatgga
attcttctgccgagtcattcggtcggaaaatctacgaagggtttagatgtacagggagga
gtcgttgcattagatcgagctaatgctgaagatgccttgcgtccaattccgaaggttttc
gattctcaagagaaacgtacgttatatcacaatttacatgttgaccgcgatgatgttatg
accgaattggttgacagtgggagccaagtagaagatgttgtcggattggaggactctgca
gcagtttgcctggaggacaaactccgatcgttaggcatactcgacacagacgatcataca
tatgaatccatccttaagtctgcaatattcaaaggcatcgatcttgaagctaatatgtcg
cagaaaaagttaagagaagcggttttatcgttggcaccgggcgatgcatgtaagttgctt
ggtaacttggttagcatctggcaatccaggttgcgtagcgggaagaacgtcctaccgtgg
atttatagtttgttgttgaatcacaatcaacatatcttgtctcaagaacagtcgacccag
attcttgattctttgtttaagataactaaatccaaagagactgcggttcaacctcttctt
caattatcaggtcgtttgcaactggtgttggcacaaattgaaagggcgtcggccaacaaa
accgaccaaacggtacgacatggtcccgagatagatggaggggagagcagcaacgacgaa
gacgaaggcaaagacgacgaagaagtcgacgatgttctttatggggaagaagaatatgaa
tctgaattaagcagtgataatgagaattag

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