Cucurbita pepo subsp. pepo (vegetable marrow): 111779655
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Entry
111779655 CDS
T05351
Name
(RefSeq) serine/arginine-rich SC35-like splicing factor SCL30 isoform X1
KO
K12900
serine/arginine-rich splicing factor 10
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111779655
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
cpep01009
]
111779655
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cpep03041
]
111779655
Protein phosphatases and associated proteins [BR:
cpep01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
111779655
Spliceosome [BR:
cpep03041
]
Common components
Common spliceosomal components
SR proteins
111779655
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
111779655
NCBI-ProteinID:
XP_023515527
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Position
LG01:1064238..1068939
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AA seq
291 aa
AA seq
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MRRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGGGGGYGRRREQSHGSLLVRNIPMDCR
PEELRAPFERFGLVRDVYIPKDYYTGDPRGFAFVEFVDPYEASEAQYHMNGKKFAGREIT
VVLAAESRKRPEQMRQRSRRGPSGYGGRRSYYGRSRSRSVSRSRSPHRPSGSSRYRSRCQ
MQLPGHTLLLRDGEATILFPPIGVMQNTPDHQEVLLVSEMVRGVIKYILQVMIMLVVTIT
MEMDIMTSLHLKERMHELTGGLLLVEHQGLLPGPDPALLMLHQDMVDEFSR
NT seq
876 nt
NT seq
+upstream
nt +downstream
nt
atgagaagatacagtccaccatatcatagtcctccaaggagaggatatggcggtcgagga
agaagcccccccgggaggggttatggtggtggcggcggcggcggcggtggtgggtatgga
agacgaagggaacagtctcacggtagccttttggttagaaatattcctatggattgcagg
ccagaggagcttagagctccatttgagaggtttggacttgtgcgagatgtgtatattcca
aaggattattacacaggtgatccacgaggatttgcgtttgtggagtttgttgatccttat
gaggcctctgaagctcagtatcatatgaatgggaaaaaatttgctggtagggagattact
gtggtccttgctgcagagtcgaggaagaggccagaacagatgcgtcaaaggagtagaagg
gggccatctggctatggtggacggcgttcttattatgggcgttctagatctcgttcagtg
tctcgatcacgctccccccatcgtccttcaggttcaagtagatatcgatcaaggtgccaa
atgcaattgccaggtcatactctcctgctccgagatggcgaggcaactattctctttccc
ccgataggcgtcatgcagaataccccagatcaccaagaggtgctccttgtgagcgagatg
gtgagaggagtcatcaagtatattctccaggttatgataatgctggtggtcacgatcacg
atggaaatggatatcatgacaagcctgcatttgaaggagaggatgcacgagctgactgga
ggtcttctcctggtagaacatcaaggtctccttccgggtcccgatcccgctctgctgatg
cttcaccaagacatggtagatgaattttctagatga
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