Cucurbita pepo subsp. pepo (vegetable marrow): 111779776
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Entry
111779776 CDS
T05351
Name
(RefSeq) ruBisCO large subunit-binding protein subunit beta, chloroplastic-like
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111779776
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpep03019
]
111779776
03110 Chaperones and folding catalysts [BR:
cpep03110
]
111779776
03029 Mitochondrial biogenesis [BR:
cpep03029
]
111779776
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cpep04147
]
111779776
Enzymes [BR:
cpep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
111779776
Messenger RNA biogenesis [BR:
cpep03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
111779776
Chaperones and folding catalysts [BR:
cpep03110
]
Heat shock proteins
HSP60 / Chaperonin
111779776
Mitochondrial biogenesis [BR:
cpep03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
111779776
Exosome [BR:
cpep04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
111779776
Exosomal proteins of other body fluids (saliva and urine)
111779776
Exosomal proteins of breast cancer cells
111779776
Exosomal proteins of colorectal cancer cells
111779776
Exosomal proteins of bladder cancer cells
111779776
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
Motif
Other DBs
NCBI-GeneID:
111779776
NCBI-ProteinID:
XP_023515683
LinkDB
All DBs
Position
LG18:complement(4326134..4331711)
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AA seq
608 aa
AA seq
DB search
MASTFTAMSSVGTLAAPGSRVVDKKLLSSSDKLTSRTSISSFALPKRQSVVLRRNRSSKI
SAMAKELHFNQDGSAIKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVA
KEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLIT
RGIEKTAKALVSELKKMSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLE
EGRSADNSLYVVEGMQFDRGYISPYFVTDSEKMAVEFDNCKLLLVDKKITNARDLINILE
EAIRGGYPVLIMAEDIEQEALATLVVNKLRGSLKIAALKAPGFGERKSQYLDDIAILTGA
TVIREEVGLSLDKAGKEVLGTASKVVLTKDTTTIVGDGSTQDAVSKRVAQIKTLIEAADQ
DYEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCT
LLRLASKVDAIKLSFENDEEKVGADIVKRALAYPLKLIAKNAGVNGSVVSEKVLSSDNFR
YGYNAATGNYEDLMAAGIIDPTKVVRCCLEHAASVAKTFLMSDCVVVEIKEPEPVAAGNP
MDNSGYGY
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
atggcttctactttcacagccatgtcttcagttggtactcttgctgcacctggaagccgt
gttgtggataaaaagcttctatcgtcttctgataagttgacttctcgcacgtccatttct
tcatttgcgctcccgaaaagacagagcgtagttcttagaagaaaccgttcttccaagatc
tctgccatggcgaaggagttgcacttcaaccaggatggttcggctattaagaaattacag
aatggtgtgaacaaacttgcagacttggtcggagttactcttggtcctaaaggaagaaat
gtggttcttgagagcaagtatggctccccgaaaattgtcaatgatggtgtaactgttgca
aaagaggttgagttggaggatccagttgagaacattggtgctaagctagtcagacaagct
gctgcgaagaccaacgacttagctggagatggaacgacaacttcagttgttttggctcag
ggtcttattgctgaaggtgtcaaggtcgtggcagctggagcaaaccctgttcttatcaca
agaggcattgaaaaaacggccaaagcgctggtctctgaactcaaaaaaatgtcgaaagag
gttgaagacagcgaattggccgatgtggctgcagttagtgctggaaataactacgaagtg
ggtaacatgatagctgaagccatgagcaaggtaggacgaaagggtgtggtgactcttgaa
gagggaaggagtgccgataacagtctctatgtcgtcgaaggaatgcagtttgacaggggt
tatatctctccttattttgtcaccgatagcgagaaaatggccgtggaattcgataattgc
aagctgcttcttgttgacaaaaagatcactaatgcaagggatcttattaacatactggaa
gaggccatcagaggtggctatcccgttttgataatggccgaggatatcgagcaagaagct
ctggcaactcttgtagtaaacaaactgagaggatctttgaagatcgctgcacttaaagct
ccagggtttggcgagcgcaagagccagtaccttgacgacattgctattcttactggagcc
acggttatcagagaggaggtcgggctttccttagacaaagctggaaaggaggtacttgga
actgcatccaaggtcgtgcttaccaaagataccacgacaattgttggcgacggtagcacc
caagacgcagtttctaagcgtgttgcacagattaaaactctgattgaggctgcagaccag
gactacgagaaagagaaacttaacgagagaattgccaaactttctggtggtgtagcagtt
atacaggttggagcacaaaccgagaccgaactcaaggaaaagaaactgagagttgaagac
gctcttaacgctacgaaggcagctgttgaggaaggtattgttgttggcggtggttgcacc
ctccttagactcgcatcgaaggtcgacgcgatcaagttatcctttgaaaatgatgaagag
aaggtcggagccgacattgtcaagagagcattagcttatcccctcaagctgatagcgaag
aacgccggtgtcaacggtagcgttgttagcgagaaggtgttgtccagtgacaactttaga
tatggatacaatgcagcaactgggaattatgaagaccttatggctgctggaatcatcgat
ccaaccaaggtggttagatgctgcttagaacatgcagcttcagtggcgaagacattcttg
atgtcggactgtgtggtggtggagatcaaggagcctgagccagttgctgccggcaatccc
atggacaattcagggtatgggtactga
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