Cucurbita pepo subsp. pepo (vegetable marrow): 111779849
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Entry
111779849 CDS
T05351
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111779849
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpep03019
]
111779849
03012 Translation factors [BR:
cpep03012
]
111779849
Enzymes [BR:
cpep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
111779849
Messenger RNA biogenesis [BR:
cpep03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
111779849
Translation factors [BR:
cpep03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
111779849
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
nSTAND3
AAA_19
T2SSE
ATPase
AAA_16
PhoH
Motif
Other DBs
NCBI-GeneID:
111779849
NCBI-ProteinID:
XP_023515789
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All DBs
Position
LG18:complement(6881412..6889955)
Genome browser
AA seq
1211 aa
AA seq
DB search
MPYSTFFNAYIRTSMSLSLRTTSSAPFCTASTRFRPWFPHLFTRNLSMGFVNLQCRPGSV
TGIRCTSQSKWIEVAFREKQQDHVRGFKQRNLAFPFLQHQSCSNYGRFAYDDVSSDDSDV
EFGSPHGQMNSSTLENVDEWKWKLTMLLRNNDELEVVSREKKDRRDFDQLSALATRMGLH
SRQYAKVVVFSKYPLPNYRPDLDDKRPQREVVLPFGVQTEVEGHLRLYQSSHHSVTRGRF
SNSYLSKSGIAENCANNNGVFEHQEPSTTQSLVMEKILRRKSLQMRNQQQDWQESLEGQK
MMEFRKSLPAFKERETLLKAISENQVVVVSGETGCGKTTQLPQYILESEIEAARGTSCSI
ICTQPRRISAMSVSERVAAERGEKLGESVGYKVRLEGIKGRDTRLLFCTTGVLLRRLLVD
RNLKGVTHVIVDEIHERGMNEDFLVIVLKDLLPRRPDLRLILMSATLNAELFCSYFGGAP
TMHIPGFTYPVRAHFLENILETTGYRLTPYNQIDDYGQEKAWKMQKQAQALKKRKTQIAS
SVEDAFEASNFLAYSPRTQESLSCWNPDSIGFNLIEHVLSYIVKRERAGAILVFMTGWDD
INSLKDQLQSHPLLGDPSRVLILACHGSMTSSEQKLIFDKPEDGVRKIVLATNMAETSIT
INDVVFVVDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQPGECYHLYPRCV
YDAFADYQLPELLRTPLQSLCLQIKSLQLGSISEFLSNALQPPEPLSVQNAIDYLKTIGA
LDEKENLTVLGQHLSVLPVEPKLGKMLILGAIFNCLDPIMTIVAGLSVRDPFLMPYDKKD
LAESAKAQFAARDCSDHLALVRAYEGWRDAERQQAGYEYCWRNFLSMQTLRAIDSLRKQF
FFLLKDTGLVDFDAENFNNSKPDGHLIRAVICAGLFPGICSVVNKEKSVALKTMEDGQVM
LYLNSVNAGYSKIPYPWLVFNEKVKVNSVFLRDSTGVSDSILLLFGGHVSRGGLDGHLKM
LDGYLEFFMKPALAETYLSLKTELDELVHQKLLNPKLDMQPHNELLSAIRLLVSEDRCEG
RFVFGRHVPVPSKKATNDGPPRQKNGDGAGGDNSKSQLQTLLLRAGHDAPTYKTKQLKNN
QFRSTVIFNGLNFVGQPCGSKKLAEKDAAAEALLWLQGETQSSSQAIDHASLLLKRSKRK
NDRTSRSAKWS
NT seq
3636 nt
NT seq
+upstream
nt +downstream
nt
atgccttactcaaccttcttcaacgcctatatcaggacttccatgtccctctccctcaga
accacttcatcggctccgttctgcacagcttcaacgcgcttcaggccttggtttcctcac
cttttcacccggaacctgtccatggggtttgtcaacttgcagtgccgtccaggttccgtc
actggtattcgttgtacgagccaatccaagtggattgaagttgcgttcagggagaaacag
caggaccatgtgaggggttttaagcagaggaatcttgcgtttccgtttttgcagcatcag
tcctgctccaattatggtcggtttgcgtatgatgatgtgtctagtgatgattctgatgtc
gaatttgggtctccgcatgggcaaatgaattcatcaacccttgagaacgtagatgagtgg
aaatggaagttaactatgcttctacggaacaatgacgaactagaagtagtgtcaagggag
aaaaaggatagacgtgattttgatcaactttcagcattggcaaccagaatgggtttgcat
agccgtcaatatgcaaaagttgttgtatttagtaaataccctctgccgaattacaggcca
gacctggatgataagcgaccacagagggaggtggtcttaccttttggggtccaaacggaa
gttgaaggccatctaagattgtaccaatcttctcaccattctgtgacaagaggacgtttc
tcaaatagttacttgtcaaaatctggcattgctgaaaactgtgctaacaataatggagtg
tttgagcaccaggaaccttcaacaacacaaagtcttgtcatggagaaaattcttcgccgc
aaaagtttgcaaatgaggaatcaacagcaagattggcaggaatctcttgagggccaaaaa
atgatggaatttcgcaaaagtctcccagcatttaaagagagggaaacattgttgaaggcc
atttcagagaatcaggtagttgttgtctctggtgaaactggttgtgggaaaaccacgcag
cttcctcagtatatattagaatctgagattgaagctgctcgtggaacttcttgtagtatt
atctgtactcagcctagacgtatttctgccatgtctgtttctgaaagagttgctgcagaa
cgtggagagaaactgggagagtctgttggttataaagttcggctggagggtataaaagga
agggacactcgtcttctcttttgcaccactggtgtactactgagaagattgcttgttgat
agaaatttgaaaggtgtaactcatgttattgttgatgagattcatgaacgtggaatgaat
gaagattttcttgtgattgtcctgaaagatcttcttcctcgacggccagatttgaggttg
atcttaatgagtgcaactctaaatgcagaacttttttgttcttattttgggggtgctcca
acaatgcatattcctggttttacatacccagttcgtgcacactttttggagaatattcta
gagacgactggctatcgattgactccatataatcaaattgatgattatggtcaagaaaag
gcatggaaaatgcaaaaacaagctcaagctctaaagaaaaggaagactcagattgcttca
tctgttgaggatgcatttgaggcgtctaactttttagcatacagtcctcgaactcaggag
tccctatcctgttggaatcctgattcaattggtttcaacctcattgagcatgtcctttct
tacattgtcaagagggagagggcaggtgctatactagtttttatgaccggatgggatgat
ataaactctttaaaagaccagctccagtcacatcctttattaggggatcctagcagagtt
ttgatccttgcatgtcatggttcgatgaccagctctgagcagaaattgatatttgataaa
cctgaagatggagttaggaaaatagtcctagctacgaacatggcagagactagtatcacc
atcaatgacgtggtttttgttgttgactgcggaaaagcaaaggaaacatcctatgatgct
ttaaataacactccttgtttgcttccatcctggatctccaaggctgccgcgcgtcaaaga
agaggtagagctggtcgtgttcaacctggtgaatgttaccatctctatcccagatgcgtg
tatgatgcttttgctgattatcaactgccagaacttttaaggaccccgttacagtctttg
tgtttgcaaatcaagagtctgcaacttggaagtatatcagagttcctatcaaatgcattg
cagccgccagagcctttatcagttcaaaatgccatagactatttgaagacaattggagct
ctagatgagaaagaaaatctgacagttcttgggcaacacttatcagttcttccagttgag
cctaaactgggaaaaatgcttatattaggagctattttcaactgtcttgatcccattatg
actattgttgctggtcttagtgtgagagatcctttcctcatgccatacgataaaaaggat
ttagccgagtcagcaaaagcacagtttgctgcacgtgattgcagtgatcatcttgcctta
gttcgagcttatgagggttggagagatgccgaaaggcagcaagccggttatgagtactgt
tggagaaactttctctccatgcaaactctcagagccatcgactctctgaggaagcagttc
ttctttttgctaaaggacactggtctagttgattttgatgcagaaaacttcaacaactcg
aagcccgatgggcacttaatccgtgcagtcatctgtgctggtttgtttcctggaatttgc
tctgttgtgaacaaagagaaatcagtagctttgaagacaatggaagatggacaggttatg
ctatacttgaactcagttaatgctggctattcaaaaatcccctacccatggctggtgttt
aatgaaaaggtgaaggtcaactcagtctttcttcgggattctaccggggtttctgactct
atccttcttttatttggaggacatgtttcgagaggaggacttgatggtcacctcaaaatg
ctggatggttatttggagtttttcatgaaacctgcattggccgagacttatttgagtctt
aaaacggagcttgatgagcttgttcatcaaaagcttttgaatccaaagttagatatgcag
ccacacaatgaactactatcagcaataaggttgttggtatcggaggatcgctgtgagggt
aggtttgtctttggtcgtcatgtgcctgtaccatcaaaaaaagcgacgaacgacggtcca
cctcgacagaaaaatggcgatggagctggaggcgataattccaagagtcagcttcagacc
ctactcctgagagctggacatgatgcgccaacttacaaaaccaagcaactaaaaaacaac
caattccgatccactgttatcttcaacggattgaacttcgttggccaaccatgtggtagc
aagaaactcgcagaaaaagatgcagctgctgaggctctactatggctacaaggcgagaca
cagtcatcttcccaagctatcgatcatgcttccttacttctcaaaaggagcaaaaggaaa
aacgacagaacatctcgtagcgccaaatggagttaa
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integrated database retrieval system
