Cucurbita pepo subsp. pepo (vegetable marrow): 111779984
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Entry
111779984 CDS
T05351
Name
(RefSeq) dicer-like protein 4 isoform X1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cpep03036
]
111779984
Chromosome and associated proteins [BR:
cpep03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
111779984
microRNA pathway
RISC loading complex
111779984
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
DEAD
Helicase_C
ResIII
DND1_DSRM
dsrm
PAZ
Cas3-like_C_2
IstB_IS21
Motif
Other DBs
NCBI-GeneID:
111779984
NCBI-ProteinID:
XP_023515970
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All DBs
Position
LG18:6021604..6034828
Genome browser
AA seq
1654 aa
AA seq
DB search
MPDGETNSTTADSVNFQPTSSASVERFMGLSPVDDQGAGSSIRTSGKDPRRIARKYQLEL
CEKALEENIIVYLGTGCGKTHIAILLIYEMGHLIRRPQKGICVFLAPTVALVQQQAKVIE
DSIDFKVKVYCGGSKCLNSHYDWEREMEEYEVFVMTPEILLRNLHHCYIKMEFVELLIFD
ECHHAQVKSDHSYAEIMRVFYKANEHKRPRIFGMTASPVVGKGACNQQNLSKSINSLEKL
LDAKVYSVEDREELEAFVSSPRFKIYYYGPVATGSSSSFMTYCCPLEDVKCQCIVALGQM
KGEHEGLLATKKLLCRMHKNIIFCLENLGVWGALQASKILLSEDNSERSELIEAAEANPK
HDSISDRYLNQAAEIFASGCKIDAGVSDMLNVDILKEPCFSKKLLRLIGILSSFRHRPNM
KCIIFVNRIVIARSLSYILQNLKFLAYWKCDFLVGVHSKLRSMSRKTMNHILTKFRSGEL
NLLIATKVGEEGLDIQTCCLVIRFDLPETVSSFIQSRGRARMPQSEYAFLVDSGNEKELG
LIDEFHKDEKRMNREISSRSSIETFDGHEESIYRVVSTGASVTSGRSISLLHEYCSKLPH
DTYFDPKPKFFYCDDLGGTICHAILPSNAPIPQIVSRPQPAGVAAKKDACLKAVEELHKL
GALSDYLLPMRDNANEGELELDSDSDSSEDETSRRELHEMISPAAFKESWTGFGYVILYC
YHIKFTPNPEDRIYKEFGLFVKAPLPQEAVRMDLELHLAHGRSVKVNLMPSRVVELLENE
ITQAECFQEMFLKVILDRSEFVHDYIPLRNNVSRSISSTSYLLLPVIVHDNEGSVFIDWK
VIRRCLSSQIFQNHACSIVKETASSDTHLMLYDGRRRSSDIENSLVYVPYKREFFFVTNI
VRRKNGYSQYKDSGSLSHFEHLKTRFGIHLKYPEQPLLCAKPLFSLHNLLHNRKQKDSEA
PYLEEYFIDIAPELCQLKITGFSKDIGSSISLLPSIMHRLENLLVAIELKCMLAAAFPAG
AEVTANRILEALTTEKCQERISLERLEILGDSFLKFAVARYLFLAHDKFDEGELTRRRSY
LVKNINLFKLATRKNLQVYIRDQPFEPSQFYLLGRPCPRICNEETRNDIHSHDNATNNAK
ASETKCSKGHHWLQKKTISDVVEALVGAFLVDSGFKAAIAFLKWIGIKVEFEASQVTNAL
VASKAYVLLADTINISSLQSSLGHKFLHKGLLLQALVHPTYHKHGGGCYQRLEFLGDAVL
DYLIMSYLYSAYPKLKPGLLTDLRSVFVRNEAFANVAVDRFFYKFLLCDSASLQSDIKSY
VDFIKAPPSERDSLEQPRCPKPLGDLVESSVGAVLVDTGFDMNYVWKIMLSFLDPIMSSS
GFQLSPIRDIIEVCQTCGWKLQFNPSKMEKYYSVEAEVKGDDFHATASAVNRRKKDAEKI
AANSILTKLKAQGFIPEVNSLEKILKSSEKMKPKLIGYDETPSVTMDRIDDGLEFSGADL
DPRVHREVGDSRPFRITRMSETLASSSGAAGEQLKPSIPLEGHDSSTDLQSLSSSSSSSS
SSSGRSGKTTARSRLYEVCAINHWNHPSFDCMNEEGPSHLKMFTYKVVLEIEEAPNTIFE
FFGAPHLTKKAAAEHAAEAALWYLKKERYLGDTD
NT seq
4965 nt
NT seq
+upstream
nt +downstream
nt
atgcctgatggagagaccaattctacgactgccgatagcgtcaattttcagcccactagc
tctgcgtcggtcgagagatttatgggtctgtctccggtggatgatcagggagcgggttca
agtataagaacatcaggcaaagatccaaggagaatcgcaaggaaatatcaattggagcta
tgcgagaaagctttggaagagaatatcattgtttatcttgggacaggctgtgggaagact
cacattgctatacttctgatatacgagatgggccacttaatcaggaggccccagaagggt
atctgtgtttttctggctcctaccgttgctttagttcagcagcaagcaaaagttatagaa
gattctatagatttcaaggtcaaggtctactgtggaggttccaaatgcttgaatagccat
tatgattgggaaagggagatggaagaatatgaggtttttgtcatgacccctgaaatatta
ctgcgtaatttacaccactgctatatcaagatggagtttgttgaacttctaatatttgat
gaatgccatcatgcccaagtcaaaagtgaccattcttatgcagaaatcatgagagtgttt
tataaagcaaatgagcataaacgtccccggatatttggcatgactgcatctccagttgta
ggaaaaggtgcttgcaatcagcaaaatttatccaagagcatcaatagtcttgagaagtta
cttgatgcaaaggtttattcagttgaagatagggaagaactggaagcgtttgtgtcatca
ccgcgttttaaaatctattattatggtcctgttgcaactgggtcgtctagctcatttatg
acttactgttgcccacttgaggacgtgaaatgccagtgtatagtggctcttggtcagatg
aaaggtgaacacgaaggtctgctggccaccaagaaactgttgtgcaggatgcacaaaaat
atcatattttgtttggaaaaccttggtgtttggggggcattgcaggccagtaaaattctc
ttaagtgaagataactctgagcgaagtgaattgatagaggcagcagaggcaaacccaaaa
catgactccataagtgatagatatcttaatcaagctgctgaaattttcgcatccggttgc
aagatagatgctggggtgtcggatatgttaaatgttgatattttgaaagagccatgtttc
tcaaagaagcttttacggcttattggaattctttcttccttcaggcatcgacccaacatg
aagtgtataatttttgtgaatagaatagttatagctaggtccttgtcgtacatacttcag
aaccttaaatttctggcatattggaagtgtgattttctcgtcggagtccactcaaagttg
aggagcatgtcaaggaagaccatgaaccatattcttacaaaattccgatctggggagcta
aaccttttgattgcaacaaaggttggtgaagaagggcttgatattcagacctgctgtctt
gtgatacgatttgatcttcctgaaacagtgtctagctttatacaatcaagaggtcgagcg
cgaatgcctcagtctgaatatgccttccttgttgatagtggaaatgaaaaggagctaggg
ttgatagatgagtttcataaagatgaaaaacggatgaacagagaaatttcttctcgctca
tccattgagacatttgatggtcatgaagaaagcatctatagagtggtttcaactggtgca
tctgtcacttctggaagaagtatatctttactacatgaatattgctcaaaacttccacac
gacacgtacttcgaccccaagccgaagtttttctattgtgatgatttaggaggaactata
tgtcatgcaattctgccctccaatgcacctattccccaaattgtcagcagaccacagcct
gctggggttgctgctaaaaaggatgcctgtctaaaagctgtagaggaattgcataaactt
ggtgctctcagtgactatctcttgcccatgagagacaatgccaatgaaggggaattagaa
cttgactctgattctgacagctccgaagatgagacttcgcgacgggagcttcatgagatg
atatctcctgctgctttcaaagagtcttggactggctttggatatgttattctttactgt
taccatattaaatttactccaaatcctgaagataggatctacaaagaatttgggttattt
gtgaaggcaccacttccccaggaggctgtgagaatggaccttgagcttcatcttgcacat
ggaagatctgtaaaggtaaatttgatgccatcaagggtcgtcgagcttttggagaatgag
attacccaggccgagtgttttcaggagatgtttcttaaggtcattttagacagatcagaa
tttgttcacgactacattccattgagaaataatgtctctagatctatttcatcgacatct
tacttgttgcttcctgtgattgtccacgataatgagggatcggttttcatagattggaaa
gttattagaagatgtttatcctcccagattttccagaatcatgcatgctctatcgtcaaa
gaaactgcttcctcggatacccatttgatgctttatgatggccgtagaaggtcgagcgat
atcgagaatagtttagtgtacgtcccctacaagcgtgaattcttttttgttactaacatt
gtgaggaggaagaatggatacagccaatacaaggactcagggtccttgagtcattttgag
catttaaagaccaggtttggcattcatcttaaataccctgagcagcctcttctttgtgca
aaacccctattcagtttgcacaacttgctacataatagaaagcagaaagattctgaagca
ccttatctggaagaatattttatcgatatcgctcccgagctttgtcaattgaagataact
ggattttcgaaagacattgggagctctatatctttgttgccatcaattatgcatcgtcta
gaaaatttgcttgttgctattgaattgaagtgtatgctagcggctgcttttccagcggga
gctgaggttactgctaacagaattctagaagctctcaccactgagaagtgccaggaacga
atttccctggaaaggcttgaaatacttggtgactctttccttaaatttgccgtagcaagg
tacctttttctcgcccacgataagttcgatgaaggagaacttacacgacgacgttcttat
ttggtgaaaaatatcaatttattcaagctagcaactagaaagaatttacaggtatacata
cgtgaccagccatttgaacctagccaattttatttacttggtcgtccttgcccaagaatt
tgtaacgaggaaacacgaaacgatatccattctcacgataatgcaacaaataatgcaaaa
gctagtgagaccaagtgcagcaaaggccatcactggttacaaaagaaaacgatcagcgat
gtggtcgaagctctggtaggagcattcctagtcgacagtggcttcaaagctgcaattgca
tttctcaaatggatcggcataaaagtagaattcgaagcttcgcaggttaccaatgctctc
gtggcaagcaaggcttacgtcctacttgcagatactataaacatttcttcccttcaaagc
tcattaggccataaatttctccataaaggtctgctgctgcaggcgctcgtacatccgact
taccacaagcacggaggaggttgttaccagagattagagtttcttggggatgccgtcctg
gattacttgatcatgtcgtatctatattcagcatatcctaagctgaagccgggtctattg
acggatttgagatcagtgtttgtgaggaacgaagcttttgccaacgttgcggtcgatcga
ttcttctacaagtttctgctttgtgattctgctagccttcaaagtgatataaaaagttat
gtagacttcatcaaagcacctccttcggaaagagattcactcgagcagccgagatgtcca
aagcctttgggagacttggtggagtctagtgttggggctgttcttgttgatacagggttt
gatatgaactatgtctggaagataatgttatcatttctggatcctatcatgagctcttca
ggcttccagcttagtcctattcgcgacataatcgaagtttgtcaaacttgtggctggaaa
cttcagtttaatccatcgaaaatggaaaaatattattcggttgaagcagaggtgaaaggg
gacgactttcatgccacggcttctgctgtcaaccgtcgaaagaaagacgccgagaaaatc
gctgccaactctatactcacgaagttgaaggctcaaggattcatacctgaggtcaattca
ttagagaagattttaaagtcgagcgagaagatgaaacctaaattgattggttatgatgaa
acaccctcggtcacgatggatcgaatcgacgatggcttagaattttctggtgcagactta
gatcctcgtgtgcaccgtgaagttggggattctcgtccatttcgtattacacggatgagt
gaaacgctggcttcttcatctggagctgcaggagaacagctgaagcctagcatccccctt
gaaggtcatgatagttcaacagacttgcagtcgttgtcatcgtcgtcatcgtcatcatcg
tcatcgtcaggtcggtcggggaaaacaacggcaagatctcgtctgtatgaagtttgtgcc
ataaaccattggaatcacccttcatttgactgcatgaatgaggaaggaccaagccattta
aagatgttcacatacaaggttgtgttggagatagaagaagcccccaatacgatattcgag
ttcttcggagcaccacatttgacgaagaaggcggcagcggagcatgcagcagaagcagct
ctttggtacttgaagaaggaaaggtacttgggtgacacagattga
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integrated database retrieval system
