Cucurbita pepo subsp. pepo (vegetable marrow): 111779997
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Entry
111779997 CDS
T05351
Name
(RefSeq) probable cyclic nucleotide-gated ion channel 16 isoform X1
KO
K05391
cyclic nucleotide gated channel, plant
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep04626
Plant-pathogen interaction
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09150 Organismal Systems
09159 Environmental adaptation
04626 Plant-pathogen interaction
111779997
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cpep04040
]
111779997
Ion channels [BR:
cpep04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
111779997
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
cNMP_binding
IQ
UBM
Motif
Other DBs
NCBI-GeneID:
111779997
NCBI-ProteinID:
XP_023515994
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Position
LG18:7736181..7742855
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AA seq
699 aa
AA seq
DB search
MHNIAYSRLGDLQKSFSLYREVPWWDHILEPDSDFVFRWHRIFLVTCLIALFVDPLYFYL
PFIGAPGCMQFNLGLGIVVTFFRTIVDLFSMFHMLMKFRTAFVAPNSRVFGRGDLVKDPT
AIAMRYLKKDFVIDLAATLPLPQIVIWFVLPALKNPTATHANHTLALIVLIQYAPRLFVI
FPLNRRINKTTGSIAKTAWAGAAYNLLLYLLASHIIGAAWYVASIQRQDECWKIECRKEM
NTTHSPSCKPFFLDCDSLNEPERKAWLRITHVLTKCDALNDDKNFQFGMFADAFTAEVAS
TNFIEKYFYCLWFGLKSLSSYGQNLATSTSSGEILFSILICSMGLVLFSHLIGQVQGYLQ
STSARLEEWRVKRRDTEEWMRHRQLPIHLQDRVRRFVQYKWIATRGVDEESILRSLPLDL
RRQIQRHLSLALVRRVPFFAQMDAQLLDAICERLVQSLNTKDTFITREGDPVNEMLFIIR
GQLESSTTNGGRSGFFNSITLRPGDFCGEELLTWALVPSPSISLPSSTRTVKSLTEVEAF
ALRAEDLKFVASQFKRLHSKKLQHAFRYYSHQWRTWGSCFIQAAWRRYVKRKLAMELARQ
EELYYATMMDQEYSHGSEMEGGEGGGGGGGGGETSGSKNTTKKKSPHLGITMLASKFAAN
TRRGLHQKSLALVSDVSSLKMPKLFKPEEPDFSAFRDHS
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atgcataacattgcgtattctcgtttgggcgaccttcaaaaatccttttctctgtaccgg
gaagtgccttggtgggatcatattcttgaaccagattccgatttcgtcttccgatggcac
cgcatcttcctcgttacttgcttgatcgcgctcttcgtcgatcctctctacttttatctt
ccattcatcggcgctcctggttgtatgcaattcaacctcggacttggcatcgtcgtcact
ttcttccgcaccatcgtcgatttgttctccatgtttcatatgcttatgaagtttcgcacc
gccttcgttgcgccaaattctagggtttttggccgtggagatctcgttaaggaccctacg
gcaattgctatgcgctacctcaagaaggattttgtcatcgatcttgccgctacgcttccc
ctgcctcagattgtgatttggttcgtgcttccagcgttaaaaaatccaacagcgacccat
gccaaccacactcttgctttgattgtgctaattcaatatgcccccagactgtttgttata
tttcctctgaaccgacgaattaataagaccaccggatcaatagccaaaactgcgtgggcc
ggtgcagcttacaatctgcttctctatttgctggctagccatattataggagctgcgtgg
tatgtggcatccattcagcggcaggatgagtgctggaagatagaatgtaggaaggagatg
aataccacgcattctccttcttgtaagcctttttttctggactgtgatagtttgaatgag
ccagaacgaaaagcgtggctaagaattactcatgttcttacaaaatgtgatgccctaaat
gacgacaagaattttcagtttgggatgtttgctgatgcgttcactgccgaagttgcttca
acaaacttcatcgagaagtacttctactgcctttggtttggtcttaagagtttgagttca
tatgggcaaaatttagcgaccagcacttctagtggtgaaattttatttagcattctgatt
tgctcaatggggttggttctgttctcacacctcataggccaagtgcagggctatctgcaa
tccacatctgcaagacttgaagagtggagagtaaaacgaagagacacagaggaatggatg
aggcatcgacagctacccattcacttgcaagaccgagttcgtcgattcgttcaatataaa
tggattgcaactcgaggtgtcgacgaagagtcgatcttgcgctctttacctttggatctt
cgacgtcaaattcagaggcatctttctcttgcacttgttcgccgtgttcctttttttgca
caaatggatgctcagctattggatgccatatgcgagcgtcttgttcaatccttgaatact
aaagacacattcataaccagagagggagatccagtaaatgaaatgctcttcatcatcaga
ggccaactagagagctccaccaccaatggtggcaggtcaggattcttcaactccatcacc
ctcagacctggtgacttctgcggtgaagagctactaacatgggccttagtcccatccccc
agcataagcttaccctcctcaactcgaaccgtgaagtcgctcactgaagtcgaggcgttc
gcacttcgagccgaagatctcaagtttgtagccagccagttcaagcgcctccacagcaag
aaactccagcatgctttcagatactattcccaccagtggaggacatggggatcttgcttc
atacaagctgcttggagaaggtatgtgaaaagaaagctagctatggagttagcaagacaa
gaggagctgtattacgcaacaatgatggaccaagaatacagccatggcagtgaaatggaa
ggtggagaaggaggtggtggtggtggtggtggtggtgaaaccagtggctccaaaaatacc
accaaaaagaaatccccacatcttggaataacaatgttggcttcaaagtttgcagcaaat
acaagaagagggcttcaccagaagtcgttggcactcgtctcagatgtcagcagcttgaaa
atgcctaagctgtttaagcctgaggaaccagatttctctgctttccgagatcatagttga
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