Cucurbita pepo subsp. pepo (vegetable marrow): 111780049
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Entry
111780049 CDS
T05351
Name
(RefSeq) endoribonuclease Dicer homolog 2 isoform X1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cpep03036
]
111780049
Chromosome and associated proteins [BR:
cpep03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
111780049
microRNA pathway
RISC loading complex
111780049
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
Helicase_C
Dicer_dimer
DEAD
PAZ
ResIII
Cas3-like_C_2
SNF2-rel_dom
dsrm
SWI2_SNF2
Helicase_C_2
AAA_22
Dicer_dsRBD
Motif
Other DBs
NCBI-GeneID:
111780049
NCBI-ProteinID:
XP_023516078
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All DBs
Position
LG18:4142318..4155038
Genome browser
AA seq
1392 aa
AA seq
DB search
MASYMELESEQLVADPIPFARSYQLEGLEKALKQNTIVFLETGSGKTLIAIMLLRSFAHQ
LRKPSPFFAVFLVPQVVLVTQQAEALKMHTNLSVGLYYGDMGVDFWDGEVWKQEIDKHEV
LVMTPAILLNCLRHSFIQLSMIKVLIIDECHHARGKHPYACIMSEFYHQQLPLDKSNLPR
VFGMTASPIKSKGGNSELMCWQHIQDLESLLNSKVYTCSGESELAKFVPISTPKFKFYMH
QDIPYALYEQLAEGLKVLKLKHERSLENPDLNPSKVEPTRKRISKAFLALMYCLDELGLW
LAWKAAESLSWMEDDFSPWETLDIFGEAIVKSFFSDALTLLASPFKSGYSYQPIGDNVEA
DMAVGLMTAKVVCLIESLLEYRSVEDIRCLVFVERIVTAVALQTLLSVLLPKHTCWKAKY
IAGRNSGLQTQTKKKQNEIVEEFRCGKVNIIVATSILEEGLDVQSCNLVIRFDPSSTVCS
FIQSRGRARMQNSDYILMVKSGDSATLSRLQRYLDSGEIMRDESLRHASLPCLPFRSDYN
EESYRVESTGAVVTLSSSVGLIYFYCSRLPSDCYFKPTPRWNTETRTLQLPKSSPCQTFS
SKDDAKYPKQSACLEACKQLHKYGALTDNLVPDMVAEEAVAQGVGNKPLDEEQPIYVPPE
FVHCCPNNSSGVYHCYLIELKQNFNYDISVHNIVLAMRTELEFEVQSMCHDMDVDRGSLD
VNFKYIGIIKLSPEQVLLCRRFQATIFRVLLKHKWDIELSKNDEICLGDSPTVDYLLLPS
TGVGLISWETVLSVLDSSIKYCVHRGISSFKGFAYDVQTQNGLDCICRLENSLVYTPHNG
HVYCIMGVLSALDGNSLLKLRKNETMLTYKEYYKMHHGIDLEYEKQPLLRGKKIFTVHNH
LKKCRKREEGVSSNSLVELPPELCSIIMSPISINTLYSYSFLPSIMHRLESMLIASNLKK
LNSDHCMQNDIPTMKVLEAITTKSCQEKFHLESLETLGDSFLKYATGQHLFKAFQKDHEG
LLSLKKDRIVCNAALCKLGCEHKISGFIRDEAFDPQKWAIPGDTHEVHQLTEEVLSNGRK
VYVRRKRKVKGKRIADVVEALIGAYLSTGGERAAIQFLNRIGIEVYFDIVPYERPFSVDA
HKLINVRHLESLLNYTFNDPSLLLEAMTHGSYMLPEIPRCYQRLEFLGDSVLDYVVTVHL
YNKYPGMSPGLLTDMRSASVSNDCYARTAVKAQLYKSILHLSHDLHKHISSTLRNFEMSS
SEATYGWESETSLPKVFGDVIESLAGAIYVDSGYNKDKVFESIRPLLEPLISPETVKMHP
RRELNEVCQKKNYNLKKTVTSRVNGKTHVTVEVEANGRIFKHTAISLDKETGKKVASREV
LKSLKDSYGPLL
NT seq
4179 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcgtatatggagttagagagcgagcagctagtggctgatccaataccatttgct
agaagttatcagttggaaggattggaaaaagcacttaaacagaacacgatagtgtttttg
gaaactggatctggcaagactttgatagccatcatgcttttgagaagctttgctcatcag
ctgcgcaaaccttcacctttctttgctgttttcttagttccacaagttgttttggtcact
caacaagctgaagctctgaagatgcataccaacttgagcgttggcttgtattatggagat
atgggtgtagacttttgggatggtgaagtttggaagcaagaaatagataaacatgaggtg
cttgtgatgactcctgcaattttgctaaattgcttgaggcatagcttcattcagctaagc
atgataaaggtcttaataatagatgaatgccatcatgccagaggcaaacacccttatgct
tgtattatgtcggagttctatcaccagcagctacctcttgataaatctaatcttcctaga
gtatttggaatgactgcttctccaataaagtcaaagggtggcaactcggagttaatgtgt
tggcaacatatacaagaccttgagtccttattgaactcgaaggtgtatacttgttctggt
gaatccgagctggccaagtttgtacctatttcaactccgaagttcaaattttatatgcac
caggacatcccatatgcattatatgaacaattagcagagggtttgaaggttttgaaatta
aagcatgaacgctctctggagaatccagatctcaatccttccaaggtagaaccgactaga
aaacggatatcaaaagctttcttggctttgatgtattgcttagatgaacttggtctttgg
ttagcctggaaggctgctgagtctttatcatggatggaagatgatttttctccatgggaa
acgttggatatatttggtgaggcaatagtgaaaagtttcttttctgatgccttaacgcta
ctcgctagtccatttaaatcaggatattcctatcagcctataggtgataatgttgaggct
gatatggctgtaggtcttatgactgcaaaagttgtttgtctcattgaatcgctacttgaa
tacaggtctgtcgaggatataagatgtctagtatttgtagaaagaatcgttactgctgtg
gcccttcaaacactattgagcgtattgctcccaaaacacacttgctggaaggccaaatat
atagctggaaggaactcgggattgcaaacccagacaaagaagaaacaaaatgaaattgtg
gaagaatttcgttgcggcaaggtcaacatcattgttgcaacctcgattctagaagagggt
ttggatgtccaaagttgcaatttagtaattagattcgacccgtcatccacagtatgtagc
ttcatacaatctagaggacgtgctaggatgcaaaactcagattacatcttgatggtaaag
agtggggattctgccactctctctcgacttcaaagatatcttgatagtggtgaaattatg
agagacgaatctctacgccatgcctctcttccgtgcttaccttttagaagtgattacaat
gaggaatcctatcgtgttgaaagcacgggtgcggttgtgactttaagttccagtgttggt
ttgatatacttctattgctctcgccttccttctgattgttattttaagccaacaccacga
tggaatacagaaactcgcaccttgcaacttcctaagagctctccttgtcagaccttttcc
agtaaagatgacgctaaatatcccaagcaaagtgcctgtttagaagcatgcaaacaactt
cataagtatggtgctttgacagataatcttgtccctgatatggttgctgaagaagctgtg
gcacaaggagttgggaataaaccacttgatgaagaacaaccaatttatgttccaccagaa
tttgtgcattgttgtcccaataattctagtggagtgtatcattgctacctgattgaatta
aagcagaacttcaattatgatatatcagttcataacatcgtgctagccatgagaaccgag
cttgagttcgaagtccaaagcatgtgtcatgacatggacgttgacagaggaagcttggat
gttaattttaaatatataggcattattaagcttagcccagagcaggttcttttatgcaga
aggttccaagctacaattttcagagtcttgttgaagcataaatgggatatcgagttgagt
aaaaatgacgagatttgcttgggagatagtcctacggtcgattatcttctgctcccttca
actggtgtaggactgattagctgggagaccgttctgtctgtattagattcatccataaaa
tattgtgtacatcgtggtatttcctcattcaagggctttgcttacgacgttcaaacccaa
aacggacttgattgcatttgcagactcgagaattctttggtgtatactcctcacaacggt
cacgtatattgcataatgggtgttttgagtgcactcgatggaaactcattactcaagctt
cgaaaaaacgaaacgatgctgacttacaaggagtattataaaatgcatcatggcattgac
ttagagtatgagaaacaaccattactgcgtgggaaaaaaatatttacagtgcataatcac
cttaagaaatgtagaaaacgcgaggagggagtatcaagtaattcgctagttgaactacct
cctgaactttgttctataataatgtctcccatatccatcaacaccttatattcgtattca
tttcttccttctattatgcatcgactcgaatcgatgctcattgccagcaacttgaaaaag
ttgaattcggatcattgcatgcaaaatgatattccaaccatgaaggtcttggaagcaata
acaacaaaaagctgccaagagaaatttcatctagaatccctcgagactcttggcgattcg
tttcttaaatacgcgactggtcaacatctttttaaagcttttcagaaagatcatgagggc
cttcttagtctaaagaaggatagaatagtttgtaatgctgctctctgtaagcttggatgt
gaacacaaaatttcgggctttattcgagacgaggctttcgatcctcaaaagtgggctatt
cctggtgatacacatgaagttcaccaattaacagaggaagtgctttctaatggaagaaaa
gtttatgttcggagaaaaagaaaggtaaaaggtaagaggatagctgatgtcgttgaggcg
ctaatcggtgcatatcttagcactggtggggaaagggcagcgattcagtttctaaatcgg
atcggtatagaagtgtattttgatattgtaccttacgagagaccttttagcgtcgatgcg
cacaagctcattaatgtcagacatttagagtccctgctgaattacacattcaatgatccc
tcattgttgttagaagcaatgactcatggttcatatatgcttccagaaattccaagatgt
tatcagcgactggaatttcttggagactcggtattagattacgttgttactgtgcatttg
tacaacaaatatcccggaatgtcaccgggattgttgactgacatgaggtcagcgtccgtg
agcaacgattgttatgcacgaactgcagtaaaggctcagctgtataaaagtatactacat
ttgtctcatgacctccacaagcatattagttcgacccttagaaacttcgagatgtcgtct
tctgaagcaacgtacggatgggaatctgagacttctttacccaaggtttttggagatgtc
attgaatctttagctggagcaatatacgtagactcgggatacaataaagataaggtgttc
gagagtatacgtccacttttagaaccgttaatatcgcccgaaacggtgaagatgcatcca
agaagagagttaaatgaggtatgccaaaagaagaactacaacttaaaaaaaactgttact
tctcgtgtcaatggaaaaacgcacgttacagttgaggttgaagccaatgggaggatattc
aaacatacagcaatctctttggataaggagactggaaagaaggtcgcttccagagaagtt
ctcaaatctctaaaggactcctatggtcctctcctatag
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integrated database retrieval system
