Cucurbita pepo subsp. pepo (vegetable marrow): 111780449
Help
Entry
111780449 CDS
T05351
Name
(RefSeq) DNA mismatch repair protein MSH2
KO
K08735
DNA mismatch repair protein MSH2
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
111780449
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cpep03400
]
111780449
DNA repair and recombination proteins [BR:
cpep03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
111780449
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
PAXNEB
KH_11
Motif
Other DBs
NCBI-GeneID:
111780449
NCBI-ProteinID:
XP_023516636
LinkDB
All DBs
Position
LG18:7209819..7219049
Genome browser
AA seq
942 aa
AA seq
DB search
MDENVDEQSKLPELKLDAKQAQGFLAFFKTLPPDSRAVRFFDRRDYYTVHGDSAVFIAKT
YYRTTTALRQLGNVSEALSSVSVSKNMFESIARDLLLERMDHTLELYEGSGSNWRLIKSG
SPGNIGSFEDVLFANNEMQDSPAIVALLPNFRENGCIVGLAYVDLTKRLMGLAEFLDDSH
FTNVESALVGLGCKECLLPLDSGKFGDLKPLHDALTKCGVMLTERKKSEFKMRDLVQDLS
RLVKGSVEPVRDMVSGFEFAPAALGALLAYAELLADESNYGNYNIQKYNLDSYMRLDSAA
MRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVKEINSRLDLVQAF
VEDTALRQDLRQHLKRISDIERLTQYLEKRRAGLQHIVKLYQSSIRLPFIKNALENYEGQ
FSSLIKEKYMECLEIWTDNDHLNKFNNLVETAVDLDQLENGEYMISSSYDPALSKLKNVQ
ESIEQQIQDLHRQVANDLDLAVDKALKLDKGTQFGHVFRITKKEEPKVRKKLSTHFIVLE
TRKDGVKFTNTKLKKLGDQYQKIVEEYKNFQKELVHRVIETASSFNEVFRPLAEMLSELD
VLLGFADLASSCPTPYTRPDITSSDEGNIILEGSRHPCVEAQDWVNFIPNDCKLVRGESW
FQIITGPNMGGKSTFIRQVGVNILMAQVGCFVPCDKASISVRDCIFARVGAGDCQLRGVS
TFMQEMLETASILKGATEKSLIIIDELGRGTSTYDGFGLAWAICEHLVEVIKAPTLFATH
FHELTALAHGNTDLEPHGKQIVGVANFHVSAHIDSSNHKLTMLYKVEPGACDQSFGIHVA
EFANFPSSVVALAREKAAELEDFSTDSTTSATTGKEIPSKRKREFGSEDMSKGVARARQF
LEEFANLPLDKMDLKEALQQVSQLRDGLKKDAVDSNWLQQFL
NT seq
2829 nt
NT seq
+upstream
nt +downstream
nt
atggatgaaaatgttgatgagcaaagcaagcttcccgagctcaaacttgatgctaaacag
gctcaagggtttctcgcattcttcaaaaccctaccccccgactcaagagctgttcgattt
tttgatcgtcgggattactatactgtccatggcgatagtgcagttttcattgcaaagacc
tattaccgtactacgactgctttacgacaactgggcaatgtatctgaagctctgtctagt
gtgagtgtcagcaaaaatatgtttgaatccattgcccgggatcttcttttggaaagaatg
gaccatacattggagctttatgagggcagtggttccaattggagactgatcaaaagtggt
tcacctggtaatattggcagttttgaagacgttttgtttgcaaataatgaaatgcaggac
agccctgctattgtggcactattaccgaacttccgagaaaatgggtgcattgttggacta
gcctacgttgatttaacaaaaagattgatggggttggctgaatttctcgacgatagccat
tttacaaatgtggagtcagctctggttggtcttggttgtaaggaatgccttctgcctcta
gacagtggaaagttcggtgatttaaaacctctacatgatgcattgacaaagtgtggtgtg
atgttaactgagagaaaaaaatcagaatttaaaatgagagatttggtgcaggatctttca
aggcttgtcaaaggttctgttgaacctgttagagatatggtatctggatttgaatttgcg
cctgctgccttaggagcattgctggcttatgcagaattactggcagatgaaagcaattat
ggaaactacaacatccagaaatacaatcttgatagctacatgaggttagactctgctgcc
atgagagcattaaatgtcctagaaagtaaaactgatgcaaacaaaaacttcagcctgttt
ggtctcatgaatagaacctgtactgctggaatgggtaaaagattgcttcatatgtggcta
aaacagcctctgttagacgtcaaagaaattaattctagactggatcttgttcaagcattt
gtggaggatactgctctccgccaggatttgagacaacatctcaaaagaatctcagatatt
gaacgattgacacagtatctggagaagagaagagctggattacagcacattgttaaactt
tatcagtcaagtataaggcttccattcattaaaaatgccttggagaattatgaaggacaa
ttttcctcacttatcaaggagaagtacatggaatgtcttgagatctggactgacaatgat
catctgaacaagttcaataatcttgtggaaactgctgttgatcttgatcagcttgagaat
ggagaatatatgatttcatctagttacgaccctgctctgtccaagttgaagaatgtgcag
gaatcgatagagcagcaaatacaggatttgcataggcaggttgctaatgatcttgatctt
gcagttgataaggctttgaagttagacaaaggtacacaatttggacatgtttttagaatt
actaagaaagaagaaccaaaagtaaggaaaaagctctccacccacttcattgtccttgaa
acccgaaaagatggagtgaagtttacaaataccaaacttaaaaagctgggtgatcagtat
cagaaaatagtcgaggagtacaagaatttccagaaagagttggttcaccgagtaattgaa
actgcatcatccttcaatgaggtattccgacctttggcggaaatgctctctgaattagac
gttttacttggttttgctgatttagcctctagctgtccaactccttatactaggccagac
atcacatcatcggatgagggaaatattatattggaaggaagtaggcacccctgtgtggag
gcccaagactgggttaatttcataccaaatgattgtaaattagtaaggggagaaagttgg
ttccaaatcattactgggcctaatatgggcggaaaatctacatttatccgacaggttgga
gtgaacattctaatggcacaagtaggttgttttgttccctgtgacaaagctagtatttct
gttcgtgattgcatttttgcccgtgtaggtgcaggtgactgtcaacttcgtggagtttct
acctttatgcaagagatgcttgaaactgcatctatactgaaaggagctacagagaagtct
ttgataatcattgatgaattgggccgtgggacatccacttatgatggatttggtttagca
tgggccatttgtgaacatcttgttgaagtgattaaagcacccactttatttgcaacccac
ttccacgaactaactgcactagctcatggcaatactgatcttgagccccatggaaagcaa
attgttggtgtggcaaattttcatgtcagtgcacacatagactcatcaaatcacaagttg
acaatgctgtacaaggttgaacctggagcttgtgatcaaagctttgggattcatgtagca
gaatttgcaaactttccttctagtgtcgtggcacttgccagagaaaaggctgctgaactg
gaagatttctccactgattcaactacttcagccaccaccgggaaagagataccatcaaag
cgaaaacgcgagtttggttcagaagacatgtccaaaggtgtagcgcgggctcgccagttt
ttagaggagtttgctaatcttccattggataaaatggatctgaaggaagctctacaacaa
gtgagccaattacgagatggtttgaagaaggatgccgtggactctaattggctccaacaa
ttcctttaa
DBGET
integrated database retrieval system
