Cucurbita pepo subsp. pepo (vegetable marrow): 111780707
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Entry
111780707 CDS
T05351
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20-like
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111780707
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cpep03041
]
111780707
03009 Ribosome biogenesis [BR:
cpep03009
]
111780707
Enzymes [BR:
cpep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
111780707
Spliceosome [BR:
cpep03041
]
Complex A
U1 snRNP components
U1 related factors
111780707
Complex B
111780707
Ribosome biogenesis [BR:
cpep03009
]
Eukaryotic type
Pre-60S particles
Helicases
111780707
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
111780707
NCBI-ProteinID:
XP_023516950
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Position
LG18:complement(7938597..7942683)
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AA seq
613 aa
AA seq
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MNPYDHRYADPNSYRERRSDLVGPQPAAPPPMAGRESMYKGFHPPPVPYYGRERGGGGAL
PNAGGFNGFPRFQPPAGPFNIGRSGNDFGSGGRRMFDSGRGGNMGFGGRRGGGTGFEGRV
GGRGAGRGGSSRGDLDNIVLPSQNFGDLVPFEKNFYTECPSVRAMTESEVKMYRERRDIR
VEGYDVPKPIRSFQEANFPAYCLDVIAKLGFVEPTPIQAQGWPMAMKGRDLIGIAETGSG
KTLAYLLPALIHISAQPRLVHGQGPIVLVLAPTRELAVQIQQEVTKFGLRANIRSTCIYG
GAPKGPQIRDLKNGVEIVIATPGRLIDMLEAGHTNLQRVTYLVLDEADRMLDMGFEPQIR
TIVSQIRPDRQTLYWSATWPREVEKLARQFLHDAYKVIIGSSDLKANQSINQVVEVLPEA
EKYRRLIKLLVEVMDGSRILIFVETKKGCDKVTRQLRMDGWPALSIHGDKKQAERDLVLS
EFKSGRNPIMTATDVAARGLDVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFF
THENAKHARELIKILREAGQIVSPALSALASSSATGGSSSKYRPQGHRGFGGNRTMVSGP
NAIPIGLTRPRPR
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atgaatccttacgaccatagatacgccgatcccaattcctaccgcgagcgccgaagtgac
ctagtgggtccacagcctgctgcgccgccgccgatggcagggcgtgaatctatgtacaaa
ggctttcatcctcctccagtaccatactatggccgtgaaagaggtgggggaggtgcttta
cctaatgctggaggtttcaatggcttcccgcggtttcagcctcccgcaggaccgttcaat
atcggtcgcagtggcaatgatttcggtagcggcggaaggagaatgtttgattctgggagg
ggcgggaatatgggttttggaggtagacgtggtggaggaacgggatttgaggggcgtgtt
ggcggacgtggggctggacggggtggttcatcaagaggggacttagataacatagttctt
ccgagtcaaaattttggggatttggtcccttttgaaaagaacttctacactgagtgtcct
tctgtgcgtgcaatgacggagtccgaagtcaagatgtacagagagaggcgtgatattaga
gtggaaggatacgatgtcccaaaaccgattcggagttttcaggaggcaaattttcctgct
tactgccttgatgtgattgcgaaattgggatttgttgaaccaacaccaattcaggctcaa
ggatggccgatggccatgaaaggaagagatttgattggcattgctgaaactggctctggg
aagactctggcctatctactgccagctttaatacacattagtgcccagcctcgtttggtg
catggtcaaggtcccattgtattggtgttagcgcccaccagagaattagctgttcaaatt
caacaagaggtcacaaaatttgggttgcgtgctaatattagaagtacttgcatttatggt
ggggctcctaagggccctcaaattcgtgatctcaaaaatggtgttgagattgttattgct
acacctggtcggctcatagatatgcttgaagctggccacacaaacctgcagcgagttact
tatcttgttttggatgaagctgatagaatgctggacatgggatttgagccacaaataagg
acaatcgtgagccaaatccgacctgataggcagacattatattggagtgccacatggcca
agggaggttgaaaaattggctaggcaatttttacatgatgcgtataaggtgattattggt
tcatcagatcttaaagctaaccagtcaataaaccaagtcgtcgaagttttgccagaggct
gagaaatatagaaggttaataaaattgcttgtagaagtgatggatggtagccgtattctg
atttttgtggagacaaaaaagggatgtgataaagtaacaaggcaattgagaatggatgga
tggccagctctatccattcatggggataaaaagcaggctgaaagggacttggttttgtcc
gagtttaagagtggaagaaacccaataatgacagccactgatgtggctgcaagagggctt
gatgtgaaagatataaaatgtgtgatcaactatgatttcccatcaagcctcgaggattat
gtccacagaataggccgaacggggcgtgctggtgcaaagggaactgcattcacattcttt
actcatgagaatgcgaaacacgccagagagcttataaagatactgcgagaagcagggcag
atcgtctcccctgcattgtctgctttagcctcgtctagtgccactggaggttctagctct
aaataccgccctcaaggacacagaggctttggtggtaaccgaacaatggtttcaggacca
aatgcgatccctattggtttgacgagaccaaggcctcgctag
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