Cucurbita pepo subsp. pepo (vegetable marrow): 111780728
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Entry
111780728 CDS
T05351
Name
(RefSeq) WD-40 repeat-containing protein MSI4
KO
K10752
histone-binding protein RBBP4
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03082
ATP-dependent chromatin remodeling
cpep03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
111780728
03083 Polycomb repressive complex
111780728
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cpep03036
]
111780728
Chromosome and associated proteins [BR:
cpep03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
111780728
Histone modification proteins
HAT complexes
HATB complex
111780728
HDAC complexes
Sin3A-HDAC complex
111780728
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
111780728
PRC2.2
111780728
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
111780728
Heterochromatin formation proteins
Other heterochromatin formation proteins
111780728
Chromatin remodeling factors
NuRD complex
111780728
NuRF complex
111780728
NuRF complex (fruit fly)
111780728
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
CAF1C_H4-bd
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_EIPR1
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
WD40_WDHD1_1st
Beta-prop_RIG_2nd
Beta-prop_EML
WDR55
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_IFT122_1st
Beta-prop_WDR75_1st
Beta-prop_DCAF12
Beta-prop_WDR90_POC16_2nd
eIF2A
Beta-prop_SPT8
WDR90_beta-prop_4th
Beta-prop_WDR35_TULP_N
WD40_RFWD3
Beta-prop_IFT140_1st
Beta-prop_WDR19_1st
ANAPC4_WD40
Beta-prop_IP5PC_F
Beta-prop_RIG_1st
Motif
Other DBs
NCBI-GeneID:
111780728
NCBI-ProteinID:
XP_023516978
LinkDB
All DBs
Position
LG18:complement(4976236..4982669)
Genome browser
AA seq
510 aa
AA seq
DB search
MDSPQSQQQQQQQLQQQQQQQPVVKKKETRGRKPKPKEEKKDEQQAKKMKAHQQPSVDER
YTQWKSLVPVLYDWFANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVI
ANCEVVKPRVAAAEHISQFNEEARSPFVKKYKTIIHPGEVNRIRELPQNSRIVATHTDSP
DVLIWDVEAQPNRHAVLGATNSRPDLILTGHQENAEFALAMCPTEPYVLSGGKDKLVVLW
SIQDHITTSATDPAASKSPGSGGSIIKKAGEGTDKTSDGPSIGPRGVYHGHEDTVEDVTF
CPSNAQEFCSVGDDSCLILWDARTGSSPAVKVEKAHNADLHCVDWNPHDDNLIITGSADN
SIRMFDRRNLTSNGVGSPIYKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYDKVG
KKTERATRTPAAPPGLFFQHAGHRDKVVDFHWNAADPWTVVSVSDDCDTTGGGGTLQIWR
MSDLIYRPEDEVLAELEKFKSHVIECAAKP
NT seq
1533 nt
NT seq
+upstream
nt +downstream
nt
atggattctcctcagtcgcagcagcagcagcagcaacagcttcaacaacagcagcagcag
cagcctgttgtgaagaagaaggagaccagaggccggaagcccaagcctaaggaggagaag
aaggacgagcagcaagctaagaagatgaaggctcaccaacagccctccgtcgatgagcgt
tatactcagtggaagtctcttgttcctgttctctatgactggttcgctaaccacaatctc
gtttggccttctctctcttgccggtggggtcctcagctcgagcaagcaacgtataagaat
cgacagcggctttatctttctgaacagactgatggcagtgttccgaatacactggtcatt
gcaaattgtgaagttgtgaagccgagggttgcagccgcagagcacatttctcagttcaat
gaagaagcacgctcaccatttgtaaagaagtacaagactattatacaccctggtgaggtt
aacagaattagggaacttccccagaattctagaattgttgccacacacactgacagtcca
gatgtcctcatttgggatgttgaggcacaacctaaccgccatgctgtccttggtgccaca
aattctcgcccagatttgattctgactggtcatcaagaaaatgccgagtttgctctagct
atgtgccccactgaaccttatgtcctatctggagggaaggacaagttagttgttttatgg
agtatccaggaccatataacaacttctgccacagaccctgctgcttcaaaatcaccagga
tctggtggatctatcataaagaaggcgggagagggaactgataaaacttctgatggtcct
tctattgggccacgaggagtttaccatggccatgaggatactgttgaagatgtgaccttc
tgtccatccaatgcacaggagttctgcagtgtaggagatgactcttgcctaatattatgg
gatgcccgtactggctctagcccagctgtcaaggttgaaaaggcacacaatgctgatctt
cattgtgttgattggaatccccatgatgataatcttatcataacagggtcagcagataat
tctattcgcatgtttgatcgtcggaatctcacttctaatggagttggctcgcccatctat
aaatttgagggccacaaagcagcggttctttgtgttcagtggtccccagataaatcgtct
gtctttggaagttctgctgaggatgggctgttgaatatttgggattacgataaggttggt
aaaaagacagagcgagctacaaggacacctgctgctcctcctggtttatttttccagcat
gctgggcacagggataaagtcgttgacttccattggaatgcagctgatccatggactgtt
gtgagtgtgtctgatgattgtgatacgactggtggaggagggacgttgcagatatggcgc
atgagtgacctaatttatcgtccagaagatgaggtgttagctgagcttgaaaaattcaaa
tctcacgtaattgaatgtgctgcaaagccttga
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