Cucurbita pepo subsp. pepo (vegetable marrow): 111781207
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Entry
111781207 CDS
T05351
Name
(RefSeq) uncharacterized protein LOC111781207
KO
K10756
replication factor C subunit 3/5
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03030
DNA replication
cpep03410
Base excision repair
cpep03420
Nucleotide excision repair
cpep03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
111781207
03410 Base excision repair
111781207
03420 Nucleotide excision repair
111781207
03430 Mismatch repair
111781207
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cpep03032
]
111781207
03036 Chromosome and associated proteins [BR:
cpep03036
]
111781207
03400 DNA repair and recombination proteins [BR:
cpep03400
]
111781207
DNA replication proteins [BR:
cpep03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
111781207
DNA Replication Termination Factors
ELG1-RFC complex
111781207
Chromosome and associated proteins [BR:
cpep03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
111781207
DNA repair and recombination proteins [BR:
cpep03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
111781207
Check point factors
HRAD17(Rad24)-RFC complex
111781207
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RCF1-5-like_lid
RFC_C
DNA_pol3_delta2
Rad17
AAA_16
Motif
Other DBs
NCBI-GeneID:
111781207
NCBI-ProteinID:
XP_023517446
LinkDB
All DBs
Position
LG19:6100252..6104293
Genome browser
AA seq
735 aa
AA seq
DB search
MCPALNLMKQRKDGYEPSDTETEWQESPWNDPKAKKLVLDYNNRRADSAASKKFSTAANI
SPPGSRRNNGKTPHRPAKDDSVLVMHQRNISPLSRAERRRHKSPFKAGAEEIGSSSMRSR
KEEKLTYSHGGNRISQKPNHSRRSVTAPRLRTRDEHMSAVNDLSQRRDRAAPSLQVNSIL
HQSKEVSQVNSLSVGEMNEMIADGRVHRGSIFNEPMVESTGSISPGDIFFSRDGLAIGMN
NNVTGKRNAFKNYISPRPNFVSKKNDDTYNQVEVNANGRGVTSAGTGLSTTTTNSAAVSR
ENSSRISTESSKISDVSGRTSESTRRFIASRRKKKNEMWFSCMRNGPCRTTKSPEKREFD
EATFIERANVVEYLKPFWADKHRPVSLSGFAFHKPEAQTLKQLVLQDSFPHILFKGPRGS
GKRVLIMALLREIYGDSCWNVSHDLRRFQIQERKLTQVFVPLTSSAHHVELNLSSEANAK
YALLGLAKEIGSEYSINVEARNLNPKASFKVVILLDVDKAVEDIQHLLRWIMDGYKDACK
VVLCCDNDTGILDSVISRCKVIKINPPVTHEIIDVLIQIAKKEEFDLPMNFASKIAAKAK
QNLRKAIMALEACKAHNYPFSDDQPIPIGWEEAVVELAAHILEDPTNPRLHLVKEKIQKL
LVDSVHPKLILQKLVEEFLKRIELRSRRELYYWHAYYNKRLPTETGTGALPKLEEFVAKF
MSMYRKSSTNLVYDR
NT seq
2208 nt
NT seq
+upstream
nt +downstream
nt
atgtgtccagctctgaatctaatgaagcagaggaaggatggatatgaaccgtctgatacg
gagacagaatggcaagagagcccttggaatgaccctaaggcgaagaaacttgtgctggat
tacaataaccgacgagcagattcggcagcatcgaagaagttcagtactgcagcgaatatt
tctcctcctggttcgagaagaaacaatggcaaaacgcctcacaggccggccaaagacgac
agtgttctagttatgcatcagagaaacatcagccccttgtcgagagcagaaagaagaaga
cacaaatctccttttaaagctggagcagaggaaattggaagctctagcatgaggtcaaga
aaagaggagaagttgacttattctcatgggggtaacagaataagtcaaaagccaaaccac
agtagaagatcagtgactgctccaaggttgagaacgagagatgaacatatgagtgctgtt
aacgatttatctcaaaggagagacagagctgctccatccttgcaggtcaactccatcctg
caccagtcaaaggaggtttctcaagtgaactctctttctgttggtgaaatgaacgagatg
attgcagatggaagggtccatagaggttcgatttttaatgaaccgatggttgaaagcacg
gggtcgatctcgccgggggacatattcttttcgcgtgatggcttggctattggaatgaat
aacaatgtcacagggaagagaaatgcgttcaagaattatataagtccaaggcctaacttt
gtgtccaaaaagaatgatgatacttataatcaagttgaagtaaatgctaatggtagagga
gttacttctgctggaacaggtttgtcaacgaccacaaccaatagtgctgctgtaagtaga
gaaaatagtagtagaattagcactgaaagtagtaagatcagtgatgtgagtggaagaaca
agtgaaagtacaagaaggtttatagccagtagacgaaagaagaagaacgagatgtggttt
tcttgtatgaggaatgggccctgcaggacgacgaaatcgcccgaaaagcgggagtttgat
gaagctacattcattgaaagagcaaatgttgttgaatacttgaaacccttttgggcagat
aagcatcgaccggtgtccttaagtggattcgctttccataagcctgaggcgcaaactctc
aagcaattagttttacaagacagttttccccacatcctgttcaagggtccgcgcggatct
ggcaaacgagtgctcattatggctcttctgcgcgagatatatggcgattcgtgttggaat
gtttctcatgatttgcgacgtttccagattcaggaaagaaaactaacgcaagtctttgtt
ccattgacgtcaagtgctcaccatgtggaactaaatttaagctcagaagcaaatgctaag
tatgctctactgggattggctaaagaaataggcagtgaatattccattaatgtggaagca
agaaatcttaatccgaaggctagtttcaaagtggtaatccttttagatgtagacaaagct
gtagaggatattcaacatttgcttaggtggattatggatggctataaggatgcctgcaaa
gtagtactctgttgtgacaacgacacaggcatccttgactcagtgataagccgctgcaaa
gttatcaaaattaaccctccagtaactcatgaaatcatagatgtacttatccaaatagca
aagaaggaggaatttgacctgcctatgaactttgcttctaagattgctgctaaagcaaag
cagaacctgagaaaagcaatcatggcgcttgaagcatgcaaggcacacaattatccattt
tctgatgaccagccaatccccattggatgggaagaggccgtggtagaactcgcagctcat
atcctcgaagacccgacgaatccaagattacacctagtaaaagaaaaaattcagaagctt
ctagttgattctgttcatccaaaactaatcctccagaagctcgtggaagaatttctgaaa
agaattgagctgaggtcaaggagggaactttactactggcatgcttattataacaagaga
ctcccaactgaaactggaacaggcgccttacccaaattggaagaattcgtggcgaagttc
atgagcatgtacaggaagagctccaccaacctcgtttatgatcgataa
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