Cucurbita pepo subsp. pepo (vegetable marrow): 111781222
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Entry
111781222 CDS
T05351
Name
(RefSeq) rRNA biogenesis protein RRP5 isoform X1
KO
K14792
rRNA biogenesis protein RRP5
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cpep03009
]
111781222
Ribosome biogenesis [BR:
cpep03009
]
Eukaryotic type
90S particles
Other 90S particles
111781222
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
S1_RRP5
S1
OB_RRP5_4th
OB_RRP5
Spt6_S1
Suf
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_Syf1_CNRKL1_C
NRDE-2
ARM_TT21_N
UTP6_C
Motif
Other DBs
NCBI-GeneID:
111781222
NCBI-ProteinID:
XP_023517465
LinkDB
All DBs
Position
LG19:complement(706833..729226)
Genome browser
AA seq
1922 aa
AA seq
DB search
MAPPSKKPVDGAKFNKKPVDGVKFNKHSKMSFKSKKKTSDVAKTEALSLQIEDDVPDFPR
GGRGSSGQQNRDKERPQGDKEFQNDYPKMTTKRGKMRRKHSSNEDDLDSLLNSGVVGNLP
KYANKITLKNISPRMKFWGVVAEVNKKDLVINLPGGLRGLVSAADAFDPILEKEMEDPEH
SLLPVMFHVGQLVPCVVLQVDDDKKESGKRKIWLSLRLSILYKDFSLDLLQEGMVLTSYV
KSIEDHGYILHFGLTSFTGFLPKTKLSDQPGNELHVGQILQCVVRSIDKTRKVVYLSSDQ
DTVSSSVAKDLKGISIDLLIPGMMVSARVQSTLENGLLLSFLTYFNGTVDMFHLQNSFHS
SNWKAHYNQNMKVNARILFIDPSTRAVGLTLIPHLVQNKAAPPHVRIGDIYDSAKVVRVD
RGSGLLLEVTSSPESTPTFVSVSDMAEDAVKKTGKKFKEGSHVRVRILGFRHLEGLAIGT
LKASAFEGPVFSYSDVKPGTLIRAKVIVVDNFGAIVQFPGGLKALCPLSHMSEFEIAKPR
KKFKVGAELIFRVLGCKSKRITVTHKKALVKSKLEVLSSYADATAGLVTHGWITKIEKHG
CFVKFYNGVQGFAPRFELGIEPGSDPSSTYHIGQVIKCRITSSTPSSKRISLSFVMKPAR
VSEDAKVELGCIVSGVVDEITETHVTLYINRSSYSRGRISVEHLSDHQGHAALMKSVLKP
GYQFDQLLVLDIENESLVLSAKQSLINLAHQLPTDPSQVNQYSVIHGFICNIIETGCFVR
FLGRVTGFSPRNKASEDQRLNLHEAFYIGQSVRSNVVDVSGETGRITLSLKQSACFSTDA
SFIQEYFSTEEKIAKLQSSDESNWAEEFGIGSVVEGKVQEVKDIGVIVSFEKYHDVFGFI
ALHGLSGLKVEAGSTIQAGVLDVSKTDRLVDLSLKPELVDKCKGKSSSRSTTRKKRKAEA
WKELEINQTVHTVVEAVKENYLVLSLPECGYTIGYASTYDYNTQRLPQKQFAIGQRVAAS
VVALPCPSTFGRLLLLLKSISEPIVTPGSKRSKKNTSCEVGSLVHAEITDIQPLEMRLKF
GVGLRGRVHITEVSNERDETTETPFSNFRIGQTIVARIVAEANHSANKKKGYLWELSVKP
EVLKDFGAMDGQITNDDLGFSIGQQVTAYVSNVSGEWAWLAVNRQTSAQLFILDSSCEPS
ELQEFSKRFYVGRAVSGYVSNINGEKKILRLVLHPLSTTSTGISDQENLKISNLQSDVPS
KKDLCHFNEGDIVGGRISKILPGVSGLLVQIGPNLFGRVHYTELTDSLVPDPLSGYNEGQ
FVKCKVIEINHSVKGTVHIDLSLRSSAGIICQDNGEHSNHEQTASRRVEKIQDLCPHMEV
QGYVKNVSPKGCFILLSRGLEAKILLSNLSDGYVKDPEKEFPVGKIVRGRILSLEPLSKR
VEVTLKSVTANGALKANSHDLKSFSAGDIVSGRIKRVESFGLFIIIDNTDVVGLCHVSEV
SDDPIENLEFSYHAGDTVRAKVLKVDEKRQRIALGMKRSYIGEGNELCTNLEETHEDATD
DDNLTKFENMDDEFDNIEPERPLRLAESRAFVPPLEVTLDDIDATDMDNLQSENKELISG
TVSKEKNDRREKKKAKEEREKEVRDAEERLLQNNMPTTPDEFEKLVRSSPNSSFVWIKYM
AFMLSLADVEKARSIAERALRTINIREENEKLNVWLAYFNLESEYGNPPEDAVAKIFQRA
LQCNDPKKVHLALLGMYERTEQHKLADELLDKMIKRFKHSCKVWLKRMQSLLKNGQDDVQ
SVVNRALLSLPRRKHIKFISQTAILEFKCGVADRGRSMFEGILREYPKRTDLWSVYLDQE
IRLGDADMIRALFERAISLSLAPKKMKFLFKKYLEYEKSVGDEERIESVKQKALEYVEST
LA
NT seq
5769 nt
NT seq
+upstream
nt +downstream
nt
atggcgccgccttcaaaaaaaccagtggatggcgcaaagttcaacaagaaaccagtggat
ggcgtaaagttcaacaagcattccaagatgtcattcaagtcgaagaaaaaaacgagtgat
gtagctaaaaccgaagccttgtcgttgcagattgaagatgatgttcctgactttcctaga
ggcggaagaggttcttcaggccaacaaaatcgtgataaagaacgtcctcaaggagataag
gagtttcagaatgattatccgaagatgacaacaaaaagaggaaagatgagaagaaagcat
tcctcaaatgaggatgatttggactctctgttgaacagtggtgtagtgggaaaccttcct
aaatatgccaataagataactttgaagaatataagtccaagaatgaaattttggggagtt
gttgctgaagtaaataagaaggatcttgtaattaatctacctgggggcttacgtggatta
gtgtctgctgctgatgcttttgatccaattttggaaaaagaaatggaggatccagagcat
agtttacttcctgtcatgttccatgttgggcaactggttccatgtgttgtgctgcaagta
gatgatgacaagaaagaatcagggaagagaaagatctggctttcattacgtttatctata
ttgtacaaagacttctcattggaccttcttcaagaaggaatggttctgacatcatatgtg
aaaagcattgaagatcatggctacattcttcattttggtttgacttccttcaccgggttt
ttgccaaaaaccaaactctctgatcaacctgggaatgaattgcatgttggtcaaattctt
cagtgtgttgttagaagcattgacaaaactcgtaaagtagtttatttgagttctgatcaa
gatactgtgtccagcagtgtggcgaaggatctaaaaggtatttcaattgaccttctcatc
cctggcatgatggttagcgcacgtgtacaatcgacccttgaaaatgggttattgctatcc
tttctgacttattttaatggaactgtcgatatgtttcatttgcaaaacagttttcattct
tcaaattggaaagctcattacaaccagaacatgaaggtcaatgctcggatattatttatt
gatccttcaactagagctgtgggattgaccctgattcctcatctcgttcagaacaaggct
gcacctccacatgtgagaattggtgatatatatgattctgcaaaagtcgttagggtcgat
aggggatcgggcctgcttcttgaagtaacctcttctccggagtcaacaccaacatttgtt
agtgtatctgatatggctgaagatgctgtgaaaaagactggaaagaagtttaaagagggg
agtcatgttcgtgttcgtattcttggcttcagacatttggaaggacttgccattgggact
ttgaaggccagtgcctttgaaggtccagtgttttcctactcagatgtgaagcctgggacg
ttgatacgcgctaaagttatagttgttgataattttggggctatcgtgcaatttcctggt
ggtctaaaggctctgtgtcctctcagtcatatgtctgaatttgaaattgccaaacctaga
aaaaaattcaaggttggagctgaattaattttccgtgtgctcggttgcaagtcaaagaga
ataactgttacacacaagaaggcacttgtaaagtcaaagttggaggttcttagttcatat
gctgatgctactgcaggattagtgactcatggctggataacgaagattgaaaaacatggt
tgctttgtcaagttttacaatggtgttcaaggtttcgctcctagatttgaactcggaata
gaacctggttctgatccaagttcaacatatcatatcgggcaagtcatcaaatgcagaatc
acaagctctactccttcctccaaacgtattagccttagttttgtaatgaaacctgcaagg
gtttctgaagatgcaaaggttgagttgggctgtattgtttcgggtgtggtggatgaaata
actgagacccatgtaacattgtatattaatagatccagttactcaaggggaaggatatcc
gttgagcatttgtcagatcatcaggggcatgctgctttgatgaagtctgtgttgaagcct
ggatatcaatttgatcaactccttgtactagatattgagaacgaaagtttagttctctct
gcaaaacaatctctgatcaatttggctcatcagcttccaactgacccaagtcaagtaaat
caatattctgttatccatggattcatttgtaacataatagaaacaggttgttttgttcgt
tttctaggacgtgtaactggcttttctccacgaaataaggcttcagaagatcaaagactg
aacctgcatgaagcattttacattgggcaatctgttcggagtaatgtagttgatgtcagt
ggtgaaacaggtagaattacactttctttgaagcagtcggcttgcttttcaacagatgct
tcctttatacaggaatacttttcaacagaagagaagattgcaaagcttcaatcatcggat
gaatcaaactgggcagaagaatttggaattggtagtgtggttgagggaaaagttcaggag
gtcaaggatattggagttattgtcagctttgagaagtatcatgatgtttttggttttatt
gcactccatggattgagtgggctaaaagtggaagctggttccactattcaggctggagtt
cttgatgtttccaaaactgatcggcttgttgatttatccttgaaacctgaattagttgat
aaatgcaagggaaaaagttctagcaggtcaactactaggaagaaacgaaaggcagaagca
tggaaggagttggagattaatcagacagtgcacactgtggtggaagctgtgaaagagaac
tatctggttctttcactgcccgagtgtggctacactattggttatgcatcaacatatgac
tacaatacccaaaggcttcctcagaagcaatttgcaatcggacaaagggttgctgcctct
gttgtggctctcccatgtccttcaacatttggaaggctgctactgcttctaaagtcaatt
agtgagcccattgttacacctggttcaaaacgatcaaaaaagaacacatcatgtgaagtg
ggatctctggttcatgctgagatcactgatatccagccccttgaaatgagattaaaattt
ggagtcggattacgtgggcgagttcatataacagaggttagtaacgagcgtgatgaaact
acagaaactcctttcagtaactttaggattgggcaaaccatagttgcaaggattgttgca
gaagctaatcattcagcgaacaaaaagaagggctacctgtgggagttgtccgtaaaacct
gaagttcttaaagattttggcgctatggatggtcagattacaaatgatgatttgggtttt
tcgattggacaacaagtcactgcttatgtaagcaatgtaagtggtgaatgggcctggtta
gctgttaatcggcaaacaagtgcccaactatttattcttgatagttcttgtgagcctagt
gagcttcaagagttttccaagcgtttctacgttggaagggctgtttctggatacgtatct
aacattaatggagagaaaaaaatcttacggttggttttgcatcctttatctactacctca
actggaattagtgatcaagaaaatttgaagattagtaatttgcagtccgacgttcctagt
aagaaagacttgtgtcatttcaatgaaggggacattgttgggggaagaatatcaaaaata
cttcctggtgttagtggactgcttgtgcaaattggtcccaatttgtttggcagggttcat
tatacagaacttacagacagtttggtgcctgatccgttgtctggatataatgaaggacaa
tttgtcaagtgcaaggttatagaaattaaccactcagttaaaggtacagtacacattgat
ttgtctctgcggtcttcggcaggcatcatttgccaggacaatggagaacacagcaaccat
gaacaaactgcttccagacgagtggagaagatacaagatctttgtcctcatatggaggtt
cagggttatgtgaaaaatgtatctccgaaaggatgcttcattttgctctctcgaggcttg
gaggcaaaaattctcttatctaatctatccgatggatatgttaaggatcctgaaaaggag
tttcccgtcgggaaaattgttcgtggaagaatattatccttggagcctttatccaagcga
gtggaagttaccctgaagtctgtgactgcaaatggtgcattgaaagcaaacagtcatgat
ttaaaaagtttttctgctggagatattgtatctggaaggattaagcgggtggagtcattt
ggtctgtttatcatcatcgataatacggatgtggttgggttgtgtcatgtgtcagaagtt
tcggacgaccctattgaaaaccttgaatttagctaccatgctggggacacggtgagagca
aaagtattaaaggtggatgaaaaaagacaacgaattgctctgggaatgaagaggtcatac
attggagaaggcaatgagctttgtacgaacctggaagaaactcatgaagatgctactgat
gatgacaatttaaccaagttcgagaatatggatgatgaatttgacaatattgaacctgaa
cgaccacttaggctagcagaatcaagggcttttgtccctccacttgaggtcactcttgat
gatatagacgcaactgacatggataacttacagtccgaaaataaagagctgatcagtggt
acagtctctaaggagaaaaatgatagacgagagaagaaaaaggccaaagaagaaagggaa
aaggaggtgagggatgcagaggaaagattattgcagaacaatatgccaactactcctgat
gaatttgaaaaattggttagaagctctcctaatagcagttttgtttggataaagtatatg
gcattcatgctctctttggctgatgtagagaaagcccgctcaatagctgagagggctttg
aggacaatcaatattcgggaagagaacgagaagctcaatgtgtggttggcttactttaat
cttgaaagtgaatatggaaatcctccagaggatgctgttgctaaaatttttcaacgagcg
ttgcagtgtaatgatcctaagaaggttcatttagctttgctgggaatgtatgagaggacc
gagcaacataagttggctgatgagctcctcgacaaaatgatcaagaggttcaagcattcc
tgcaaggtttggttgaagcggatgcaaagtttattaaagaatggacaagatgatgttcaa
tcagtcgtaaaccgtgccctactaagccttccacggcgtaagcacattaagtttatctca
caaacagctatccttgaattcaagtgtggtgtggcagatcgaggtcggtcgatgtttgaa
ggaattcttcgagagtatccaaagagaacagacttgtggagcgtctatcttgatcaagaa
attcgactcggtgatgcagacatgattcgtgctctgttcgagagggcaattagtttatct
cttgctcccaagaagatgaagttcttatttaaaaagtatttggaatacgaaaagtctgtt
ggtgatgaagaacgaatcgaatcggtgaagcaaaaggcattggaatacgtcgagagtaca
ctggcctaa
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integrated database retrieval system
