Cucurbita pepo subsp. pepo (vegetable marrow): 111781370
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Entry
111781370 CDS
T05351
Name
(RefSeq) DNA helicase INO80-like isoform X1
KO
K11665
chromatin-remodeling ATPase INO80 [EC:5.6.2.-]
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
111781370
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cpep03036
]
111781370
Chromosome and associated proteins [BR:
cpep03036
]
Eukaryotic type
Chromatin remodeling factors
INO80 complex
111781370
INO80 complex (yeast)
111781370
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Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
DBINO
Helicase_C
ResIII
DEAD
HDA2-3
Motif
Other DBs
NCBI-GeneID:
111781370
NCBI-ProteinID:
XP_023517690
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All DBs
Position
LG19:301334..316855
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AA seq
1517 aa
AA seq
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MDRHRQSKDLFYSNLFSLEFWVLRQPLVNFQLPQPEDDFDYYANSSHDESRGSPGRTITT
QGNGTMTKRELSLVRKRRQSLNSEEEDDGANDYYGTHVTEERYRQMLGEHIKIYKRRSKH
SSSPMPARMGNSVSKGNSSLRARRSGSEQHEGFLEMETANDYNPHRPGIYHDPDFAPLRT
PNRVIYEPAYLDIGDGIIYKIPPTYDKLAASLNLPSFSDIQVEEVYLEGTLDLGSLASMI
ADDKRFGNRSQAGMGDPRHQYESLQARLDALSASNSSQKFSLKVSDIGLNSSIPEGAAGS
IKRAILSEGGVLQIYYVKVLEKGDTYEIIERSLPKKQNVKKDPSVIEREELEKIGKIWVN
IVRRDLPKHHRNFTAFHRKQLIDAKRFSEICQREVKMKVSRSLKMMRGVAIRTRKLARDM
LLFWKRIDKEMAEVRKREEREAAEALRREQELREAKRQQQRLNFLIQQTELYSHFMQNKS
NLHPSEALPLGDEKPDYQEGTWNSDSMPAEEEDPEEAELKKEALRVAQDAVSKQKRLTSA
FDDECSRLRQASEPDPNEVAGANNIDLLHPSTMPVTSTVQTPELFKGSLKEYQLKGLQWL
VNCYEQGLNGILADEMGLGKTIQAMVFLAHLAEDKNIWGPFLVVAPASVLNNWVDEINRF
CPDLKALPYWGGVTDRAVLRKKINPKNLYRRDAGFHILVTNYQLLVADEKYFRRVKWQYM
VLDEAQAIKSSTSIRWKTLLSFNCRNRLLLTGTPVQNNMAELWALLHFIMPTLFDSHEQF
NEWFSKGIENHAEHGGTLNEHQLNRLHSILKPFMLRRVKKDVVSELTKKTEITVHCKLSS
RQQAFYQAIKNKISLAGLFDSNRHINGKKALSLMNIVIQLRKVCNHPELFERNEGSTYLY
FADIPNPLLPPPFGELEDVHYSGGHNPIEFKLPKLVHQDVLQSSKSFAVAHGIGGSLQKH
FNIFSSENVFRSIFMQGDYLHQSYRQSGTFGFTHLMDLSPAEVMFFANGSFLERLLFSIT
RWDRQFLDEILEFIMESIDDDDPENGSLEQKKVRVVTRMLLMPSIYQTNLLRRKLATGPG
DAPFEALIIPQQERLQSNVGLLHAAYTFIPRIRAPPIGIHCSDRSFTYQTVEQLHDPWVK
RLFIGFARTSDFNGPGKPNEPHPLIQEIDSEIPVSQPALQLTYGIFGSSPPMQSFDPAKL
LTDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYKYLRLDGSSTIMDR
RDIVREFQLRNDIFVFLLSTRAGGLGINLTAADTVIFYENDWNPTLDLQAMDRAHRLGQT
KDVTVYRLICKETVEEKILERASQKNTVQQLVMTGGHVQGDILAPEEVVSLLLDDAQLEQ
KLREIPIVAKGRHQNKQAKGIRVDAEGDASLEDLMNTESRGTEYDVPSPDPEKTNSSTKK
RKGGSEKQSSSKARSLQNINKTTPVVQFDLDDSRQNVESQTQKPKRPKRPTKSVNGNLVP
ATTSTNMGILEQTQYPQ
NT seq
4554 nt
NT seq
+upstream
nt +downstream
nt
atggaccgtcacaggcaatccaaggacttgttctactccaacctcttcagccttgagttt
tgggtcctgcggcagccattggtgaacttccaacttccgcaaccagaggatgattttgat
tattatgctaatagtagtcatgatgagagcagaggtagcccaggtagaacaattacaaca
cagggtaatggtaccatgactaagagagagttgagcttggtgagaaaaagaaggcagtcc
ctgaacagtgaggaggaggatgatggtgcgaacgattactacgggacgcacgtcactgaa
gagcggtatcggcaaatgcttggagaacacattaagatttataagcgaaggtctaaacac
tcctcatctcccatgcctgcacgtatgggtaattcagtgtccaaaggtaactcaagttta
agagctaggaggtcagggagtgaacaacatgaaggatttcttgaaatggaaacagcaaat
gattataatcctcatagaccaggaatttatcatgatccagattttgccccgctgcgtacc
cctaacagagtaatatatgagcctgcatatttggatattggggatggcatcatttacaaa
attcccccaacttacgataagctggccgcttcactgaacttgccaagcttctctgacatc
caagtagaggaagtttacttagagggtactttggatttggggtctttagcatccatgatt
gctgatgacaaaagatttggaaaccgaagccaggcagggatgggggaccctcggcaccag
tatgaatcgcttcaggcaagattagatgccttgtcagcttcaaactcgtcacagaagttc
agtcttaaagtatctgatattgggctgaattcatccatccctgagggggctgcgggaagt
ataaagcgagctattttatccgagggtggtgtgctacaaatatattacgtaaaggttttg
gagaagggagacacttacgagattattgaacgcagcctgcccaagaagcaaaatgtaaag
aaagacccttctgtcatagagagagaggaattggagaagattggaaaaatctgggtcaac
attgtaaggagagacttgccaaaacatcatcgaaatttcacagcatttcatcgaaagcag
ctaattgatgccaagaggttctcagaaatttgccaaagggaggtgaaaatgaaggtcagc
agatctcttaaaatgatgaggggtgttgctattcggacaaggaaattagctagagacatg
ttgctcttttggaagcgtattgataaggagatggcggaagtgcggaaaagagaggaaaga
gaggctgctgaagctttgaggcgagagcaggaacttcgagaagctaagagacagcagcag
aggctcaattttcttatacaacaaacagaactttatagtcattttatgcagaacaaatca
aatttgcatccttctgaagctctgcctttgggagatgaaaaaccagattaccaggaaggg
acttggaactcagatagcatgcctgctgaggaagaagatcctgaggaggctgaactgaag
aaggaggcacttagagttgctcaagatgcagtctcgaagcagaaaaggttaacaagtgca
ttcgatgatgaatgctcaagactacgccaagcttctgaacctgatccaaatgaggtcgcc
ggagctaataacatagatctgcttcatccctcaaccatgcctgtaacttcaacagtacag
acacctgagttgtttaaaggtagccttaaagaatatcagctaaaaggtctccaatggttg
gtcaattgttatgagcagggtttaaatggtatacttgctgatgaaatgggccttggaaaa
accatccaggcaatggtatttttggctcatttggctgaggataaaaatatatgggggcct
tttctcgttgttgcacctgcatctgtcttgaacaattgggtcgatgaaatcaatcgtttc
tgtcctgacctgaaagctcttccatattggggtggggttaccgatcgtgcagttcttagg
aagaagattaatcccaagaatttatatcgcagggatgctggttttcacatcctcgttacc
aactatcagctacttgttgctgacgaaaagtatttccggcgtgttaagtggcaatatatg
gtattggatgaggcacaggcaatcaaaagttctacgagcataaggtggaaaacactgcta
agctttaattgtcggaaccgcttgctgcttactgggacacctgtccagaataatatggcc
gagttgtgggcccttttacattttatcatgcctactttgtttgacagccacgaacagttc
aatgagtggttctcaaaaggaatcgaaaatcatgcagaacatgggggtactttgaatgaa
caccaacttaaccgcttgcattcaatactaaaaccttttatgttgcggagagtaaaaaaa
gacgtagtctctgagcttactaaaaaaactgagattacagtgcattgcaagttaagttct
cggcagcaagctttttatcaagctatcaagaataagatatctcttgctgggttgtttgac
agcaataggcatattaatgggaagaaagctctcagtcttatgaacattgtcattcagcta
agaaaggtatgcaatcacccagagttgttcgaaaggaacgagggaagcacgtacttatac
tttgcagacattccaaatcctcttttgccccctcctttcggggaacttgaggacgtacac
tactcaggaggccacaatcccatagagttcaagttaccgaaactggtccaccaagacgtt
cttcaaagttcaaaatcatttgcagttgcacatggcattggaggatctcttcagaaacat
tttaacatattttcttcggaaaacgtttttcgatccatattcatgcaaggagactattta
caccagtcatatcgtcaaagtggtactttcggttttacccatttgatggatctatcccct
gcagaagttatgttttttgccaatggttcttttctagaacggctacttttttccataacg
agatgggaccggcaatttctcgatgaaatcctggaattcattatggaatctattgatgat
gatgatccagaaaatggttctcttgagcagaaaaaagtgcgcgtcgttacaagaatgttg
ttgatgccttccatatatcagactaacttactccggagaaaactcgcaacagggcctggt
gatgctccttttgaggctttaatcattcctcaacaggagaggcttcagtccaacgttggg
cttcttcacgcagcatacacgtttattccaaggattcgagctccaccgataggtattcac
tgctcagatagaagctttacttaccaaacggttgaacaattgcatgacccttgggttaag
agattgtttatcgggtttgcacgaacatctgactttaacggaccagggaagccaaacgaa
ccccaccctttgattcaagagattgattctgaaataccagtttcccagcctgctcttcag
ttgacgtacggtattttcgggtcctctcctccaatgcaaagttttgatccagcaaagttg
ctcacggactctgggaagctacaaacactcgatatattactgaaacgcttgcgagccgaa
aatcatcgtgtactcctgtttgctcaaatgacaaaaatgttgaatattctcgaggattac
atgaattatcggaagtataaataccttagactcgatggatcctccactataatggatcgt
cgagatatcgtcagggaattccaacttcggaatgatatttttgtgttcttattgagcaca
agagctggtggacttggcattaacttaacagctgctgatactgtcatcttctatgaaaat
gattggaatccgacattggatttgcaggcgatggacagagctcaccgtctcggacagaca
aaagacgtcaccgtgtacagactgatatgcaaagagacagttgaagagaagattcttgaa
agagctagccagaaaaacactgttcagcagcttgtcatgaccggcggccatgttcaagga
gacatcttagctcctgaggaggtcgtttctttacttctcgacgatgcgcagttggagcaa
aaattacgagaaatacctattgtggcaaagggtagacatcagaacaaacaagcgaagggt
ataagagttgatgctgagggagatgcatctttggaggatctaatgaacaccgaatcccgg
ggtactgaatacgacgttccatctcctgatcccgaaaaaactaactccagcacgaaaaag
agaaaaggtggttctgaaaagcaaagttcatcgaaggctcgaagtttacaaaatataaac
aaaactaccccggtggttcagtttgacttggatgactctcggcaaaacgtcgaatctcaa
actcagaaaccgaagagaccaaagcgaccaaccaagagtgtaaatggaaaccttgtacca
gcaacaacctccacaaacatgggaattttagagcagactcaatatccacaatag
DBGET
integrated database retrieval system
