Cucurbita pepo subsp. pepo (vegetable marrow): 111781679
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Entry
111781679 CDS
T05351
Name
(RefSeq) probable rhamnogalacturonate lyase B
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
111781679
Enzymes [BR:
cpep01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
111781679
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Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
RhgB_N
CarboxypepD_reg
EMC7_beta-sandw
Motif
Other DBs
NCBI-GeneID:
111781679
NCBI-ProteinID:
XP_023518133
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Position
LG19:5660875..5664105
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AA seq
661 aa
AA seq
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MVLLLLFIFTLSLAKARPQQQHSSPPLAPDVFLQWQIRGQVAMDNGLIRVTFSREGNVIG
IKYNNMDNILDYHNAYNNRAYLDLAWNTPNQTSIIERVKATNVKVITATGDQIELSFTRY
WNSSDPFSVPLNIDQRYILRRGDSGYYTYSMFERLETWPELEVDEIRIAYKALRDKFHYM
AVSDDRQRTMPTQLDRMTGQRLAYAEAVLITQPTNPDVKGEVDDKYQYSQENMDNRVHGW
VSRDPNVGFWMITASDEFRSGGPVKQELTSHVGPTTLTVFKSNHYAGKDASMRFKEGEAW
KKVFGPVFIYLNSDPTGTETPGSLWEDAKNQMRIERGKWPYGFVESKEFPRSEERGSVSG
RLMVRDRFAKKGQMWADSAFVGLAAPGEVGSWQTESKGYQFWTRADEDGNFFIQNIRPGN
YNLYAWVPGVIGDYKYDGDIIVTAASSTNLSVLIYDPPRRGPTLWEIGIPDRKAAEFYIP
DPEPTLTSHFYNNTKIQTPDKFRQYGIWARYADLYPDQDLVYNVDTDDYRRHWFYAHVTR
ATGSGDYQATTWQIVFRLRGPIKTGTYTLRLALASSSHGVVDVRFNNPLARRPAFTTGYW
NAGRDNAIARHGIHGLYRLFNFDVPIYYLVEGDNVIYLTQRRHAGPFLGVMYDYIRFEGV
E
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atggtgctccttctcttattcatcttcactttatcgctcgccaaagcacggccacaacag
cagcattcgtccccgccgttggcgcccgacgtattcctacaatggcagattcgtggacag
gtggcaatggacaatgggttgattcgagtcactttttctcgcgaaggcaatgttattggc
ataaaatacaataacatggataacatacttgattatcacaatgcatacaataacagagca
tatttggatttggcttggaacaccccaaatcagacaagtattattgaaagagtaaaggca
accaatgtgaaggtgattacagccacgggtgaccaaatagagctttcattcacccgatat
tggaattcttcagaccctttctcagtccctttgaacatagaccagaggtatattctgaga
cggggcgattctggatactatacgtatagcatgtttgaacggctggaaacttggcctgaa
cttgaagtggacgagatcagaatcgcgtacaaggccctaagagacaaatttcattacatg
gcggtatcagacgatcgacagaggaccatgcccacgcaactggaccggatgactgggcag
cgtctcgcttacgcggaggcggttctcataacccaacccaccaacccggacgtcaaagga
gaggtggacgataagtaccagtactcgcaagagaatatggataacagggtgcatggatgg
gtgtctagggacccaaacgtggggttctggatgatcacggccagtgatgagtttcgttcg
ggggggccggtcaagcaagaactcacatcccacgttggccccacaactcttacggtgttc
aagagtaatcattatgcgggtaaggatgcttcgatgagatttaaggagggagaagcatgg
aaaaaggttttcggtccggttttcatttatctaaactcggacccgaccggcactgaaacc
ccgggttcactatgggaagatgctaaaaaccagatgaggatagagagggggaagtggccg
tatgggttcgttgagtcaaaagaatttccaagatcagaggaaagaggcagcgttagtggc
cgattaatggtccgagatagattcgccaagaaggggcaaatgtgggccgattctgcgttt
gtgggcctcgcagctcccggggaagtggggtcttggcaaactgagagcaaggggtatcaa
ttttggacacgagcggatgaagatggaaatttcttcattcaaaatataaggccgggaaac
tacaatctctacgcatgggtacccggcgtcattggcgattacaagtacgacggcgacatc
attgtcacggcggcgagttccactaacctgagcgtgctgatttacgacccaccacgacga
ggcccaactctgtgggagatcggcatccctgaccggaaggcagccgagttctacataccg
gatcctgaacccaccttaacgagccacttttacaacaacaccaaaattcaaaccccagat
aagttccggcagtacggtatctgggcacgctacgctgatttgtaccctgatcaggatctg
gtgtacaacgttgacacggatgactaccgtcgccattggttttacgctcacgtaacaaga
gccactggatccggggactaccaagcaactacgtggcagattgtgtttcgtcttcgagga
cccataaagaccggaacctatacgctccggttggcgttggcctccagtagtcatggggtg
gtcgatgtccggttcaacaacccgttggccagacgacctgctttcacgaccgggtattgg
aacgcaggaagagataacgcaattgcaagacatggcattcatgggctgtataggttattc
aacttcgatgttcccatttattatttggtcgaaggagacaacgtaatctatcttacacag
agaagacatgcgggtcctttcctaggagtaatgtacgactacatacgatttgaaggtgta
gagtag
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