Cucurbita pepo subsp. pepo (vegetable marrow): 111782011
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Entry
111782011 CDS
T05351
Name
(RefSeq) WD repeat-containing protein 3-like isoform X1
KO
K14556
U3 small nucleolar RNA-associated protein 12
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
111782011
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cpep03009
]
111782011
Ribosome biogenesis [BR:
cpep03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
111782011
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Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR3_2nd
Beta-prop_WDR3_1st
Beta-prop_WDR5
Beta-prop_IFT122_1st
Beta-prop_THOC3
WD40
WD40_CDC20-Fz
WD40_Prp19
WD40_WDHD1_1st
EIF3I
Beta-prop_EML_2
WDR55
Beta-prop_WDR36-Utp21_2nd
WD40_Gbeta
Beta-prop_WDR36-Utp21_1st
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
Utp12
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
Beta-prop_SCAP
DSE1_N
ANAPC4_WD40
Beta-prop_TEP1_C
WDR90_beta-prop_4th
NBCH_WD40
ASA1
Beta-prop_WDR75_1st
CFAP251_N
Beta-prop_IFT140_1st
Beta-prop_NOL10_N
Beta-prop_Aladin
WD40_MABP1-WDR62_1st
Beta-prop_VPS8
Beta-prop_WDR41
Beta-prop_SPT8
PEP5_VPS11_N
Beta-prop_RIG_2nd
Beta-prop_NWD2_C
Beta-prop_WDR19_1st
Beta-prop_WDR75_2nd
Beta-prop_DCAF4
Beta-prop_IP5PC_F
WDR54
Beta-prop_HPS5
Beta-prop_LRRK2
Beta-prop_ACSF4
PROPPIN
CDtoxinA
PAC11
PALB2_WD40
KNTC1_N
Beta-prop_WDR35_TULP_N
Motif
Other DBs
NCBI-GeneID:
111782011
NCBI-ProteinID:
XP_023518532
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Position
LG19:3905051..3912552
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AA seq
942 aa
AA seq
DB search
MVKAYLRYEPAAAFGVIVSVDSNITYDSSGKHLIAPALEKIGVWNVRQGVCTKNLTPTQG
SRGPSLAVTSVASALSSLIASGYGDGSIRIWDTEKGTCETTLHGHKGAVTVLRYNKLGSM
LASGSKDNDVILWDAVGETGLFRLRGHRDQVTDLVFLDSSKKLVSSSKDKFLRVWNLETQ
HCMQIVGGHHSEIWSMDVDPDERFLVTGSADQELRFFTTKHDWVNGKSVDESNTNGTEKD
KDQSSKSKWEVLKQFGEIMRQSKDRVATVRFNKSGNLLACQVAGKTVELFHVLDENEAKR
KAKRRINRKKGKKAGKGEHDVIENGDTNNAIGEEGSGTTITVSDVFKLLHTIRASKKICS
LSFCPSISKNSLSTLTLSLNNNLLEVYSVESSAVTKLHSIELQGHRSDVRSVTLSSDNSL
LMSTSHNAVKIWNPSTGSCLRTIDSGYGLCGLIIPQNKYALVGNKSGGIEILDIASGSCI
EVVEAHGGSIRSIVALPNENGFVTASADHDIKFWEYQIEKKSDQDPRTLTITFVRSMKMN
DDVLVAAVSPDAKYLAAALLDSTVKVFFMDSFKVFRTLYGHKLPVLCMDISSDGDLLVTG
SADKNLKIWGLDFGDCHKSIFAHSDSVMAVQFVKKTHYVFSVGKDRLVKYWDADKFELLL
TLEGHHADVWCLAISNRGDFIVTGSHDRSIRRWDRTEEPFFIEEEKEKRLEEMFESDLDN
AFENRYMPNEEVPEEGAVALAGKKTQETISATDLIIDALDMAEAEVKRISEYEEQKINGR
ASHFEPNVLMLGLSPFEYVLRALSNVHTNDLEQTLLALPFSDSLKLLSYLKDWTSKPDKV
ELICRISTVLLQTHHNQLVTTPAARPALTILRDILYARIKECKDTIGFNLAAMDHLKQLL
SMRSDALFQDAKLKLQEIRSQNSKRLETRTDMRQGKRKKKNK
NT seq
2829 nt
NT seq
+upstream
nt +downstream
nt
atggtgaaggcctacctccggtacgagcctgcagcggcgttcggagtgatcgtctccgtc
gattctaatattacatacgatagttccggaaagcacctcatagctccagctcttgaaaag
attggagtctggaatgttcgtcaaggtgtttgtaccaagaatttaacgcctactcagggc
tctcgtggaccttctcttgctgttacgtccgtcgcctccgctctgtcttctctgattgcc
agtggatatggtgatggtagtataagaatttgggatactgaaaaaggaacctgtgagact
actttacacggacataaaggggctgttaccgtccttaggtacaataagcttggttccatg
cttgcatcgggaagcaaagataacgatgttatactatgggatgctgttggtgagacgggt
ctttttcgccttcgtggccatcgtgatcaggtaactgatttggtgtttctagattcaagt
aaaaaactcgtcagctcttccaaagacaagtttttaagggtctggaatcttgaaacacag
cattgtatgcaaatagttggtgggcatcatagtgaaatttggtcaatggacgttgatcct
gatgaacggtttttagttactggatctgctgatcaagaacttcgatttttcacaactaaa
catgattgggtgaatggtaaatctgttgatgaatcaaatacaaacggaaccgagaaggat
aaagatcaatcctctaaaagtaaatgggaagttctaaaacagtttggtgaaattatgcga
caaagtaaggatagagttgctactgtgaggtttaacaagtccggaaatttgttggcctgt
caagtggcaggaaagactgtcgagttattccatgtcttggatgagaatgaagctaagcgt
aaagcgaaacgtcgcattaatcggaagaaaggaaagaaagctggaaagggagaacatgat
gtaatagaaaatggagacacaaataacgctattggagaagaaggaagtggcaccacgatt
actgtttctgatgtctttaagctactccacacaatccgggcgtccaagaaaatttgttcc
ctttctttctgtccctcgatttcaaaaaattcgctgtccacattaacattatctttgaat
aataatttattagaagtttattcagttgaaagcagtgcagttacgaaattacattctatt
gaactccaggggcaccgttctgatgtcagaagtgtgacacttagctctgataattcactt
ttgatgtccactagtcacaatgctgtaaaaatttggaatccaagtactggatcttgtctt
cgtactattgattctggatatgggctttgtggtttaatcattcctcaaaacaagtatgca
ctcgttggaaataaaagtggggggatagaaatactggacattgcaagtggcagttgcatc
gaagttgtagaagctcatggtggatctatacgttcaattgtagctctaccaaatgaaaat
ggatttgtcacagctagtgctgaccatgacattaagttttgggagtaccaaattgagaaa
aaatcggatcaagaccctagaacccttacgataacctttgtgaggagcatgaagatgaac
gatgatgtccttgtggctgctgttagtcctgatgccaaatatcttgctgcagcactgttg
gattccacggtgaaggtcttctttatggattccttcaaagttttccgtactttatatggc
cacaagctacctgtgctatgtatggatatctcatcagatggagatttgttagtgactgga
tctgcggacaaaaatttgaagatttggggtttggactttggtgactgtcacaagtctatt
ttcgcccattctgatagtgtcatggctgttcagtttgtgaagaaaactcactacgtattc
agtgttggaaaggatcgccttgtaaagtattgggatgctgacaaattcgagttactttta
acgcttgagggacatcatgctgatgtttggtgtcttgctatcagcaaccgtggtgatttc
atagttactggatctcatgatcgatccatacgtcgctgggatcgaacagaagaaccattt
ttcatagaggaagagaaagaaaaacgattggaagaaatgtttgagtccgacctcgacaat
gcatttgagaataggtatatgcccaatgaagaagttccggaggagggtgcggttgctttg
gctgggaaaaaaactcaagagacgatttcggccacagacttgattattgatgctctagac
atggcagaggcagaagtcaaacgtatatctgaatatgaggagcagaaaataaatgggaga
gcttctcattttgagccaaatgttctaatgcttggcctctcgccatttgaatacgttctt
cgtgcactttcaaatgttcacacaaatgatttggagcagacattactggctttaccattc
tcagattctctgaagctactatcttacttgaaagattggacatccaaacccgacaaggtt
gagctcatttgcaggatatctacagttttgttgcagacacaccacaatcaacttgttacc
acccctgcggcaagacctgcattaactattctaagagacattctttatgctagaatcaag
gaatgcaaagacaccattggtttcaacttagcagcaatggatcatctcaagcaactactt
tccatgagatctgacgcactatttcaagatgctaaattgaagttacaagaaattcgatcc
cagaattcaaagcgtttggagacgaggacagatatgagacaaggaaagagaaagaagaag
aacaagtaa
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