KEGG   Cucurbita pepo subsp. pepo (vegetable marrow): 111782054
Entry
111782054         CDS       T05351                                 
Name
(RefSeq) protein ANTHESIS POMOTING FACTOR 1 isoform X1
  KO
K14962  COMPASS component SWD2
Organism
cpep  Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:cpep00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    111782054
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cpep03019]
    111782054
   03036 Chromosome and associated proteins [BR:cpep03036]
    111782054
Messenger RNA biogenesis [BR:cpep03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     111782054
Chromosome and associated proteins [BR:cpep03036]
 Eukaryotic type
  Histone modification proteins
   HMT complexes
    COMPASS/SET1 complex
     111782054
    COMPASS/SET1 complex (yeast)
     111782054
SSDB
Motif
Pfam: WD40_Prp19 WD40_WDHD1_1st WD40 WD40_CDC20-Fz Beta-prop_EML_2 WDR55 EIF3I Beta-prop_CAF1B_HIR1 ANAPC4_WD40 Beta-prop_TEP1_2nd NBCH_WD40 Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C WD40_MABP1-WDR62_2nd Beta-prop_EML Beta-prop_SPT8 Beta-prop_IFT122_1st Beta-prop_SCAP Beta-prop_VPS8 Beta-prop_Vps41 WD40_MABP1-WDR62_1st Beta-prop_WDR75_1st Beta-prop_NUP159_NUP214 KNTC1_N Beta-prop_WDR35_TULP_N Cytochrom_D1 VPS11_N
Other DBs
NCBI-GeneID: 111782054
NCBI-ProteinID: XP_023518597
LinkDB
Position
LG19:complement(6314393..6319428)
AA seq 332 aa
MGGAQSEREEKVSLELTEETLQSMEVGMTFRDYNGRISSMDFHRTSSYLVTASDDESIRL
YDVGSATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLNDNKYLRYFKGH
HDRVVSLSLCARKECFISGSLDQTVLLWDQRAEKCQGLLRVQGKPTTAYDEQGVVFAIAY
GGYIRMFDSRKYEKGPFDIFSVGEDVSDTNVVKFSNDGRLMLLTTSDGHIHVLDSFRGTL
LSTYNVKPISSNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSSEMEPPVIK
WAPGSLMFATGSSELSFWIPDLSKLGAYVDRK
NT seq 999 nt   +upstreamnt  +downstreamnt
atgggaggggctcaatccgaaagggaggagaaagtgtctctggagctaaccgaagaaacg
cttcagagtatggaagtcggcatgacattcagagactataatggtagaatcagttcaatg
gactttcataggacttcaagctatctggtgactgcaagtgatgatgaatccatccgactt
tatgatgttggcagtgcaacatgtttgaaaacaattaacagcaaaaagtatggggttgat
ctggtttgcttcacttctcatcctacaacagtgatttattcttcaaaaaatgggtgggat
gaatctctgcggcttctctccttgaacgacaataagtatctgcggtactttaaaggacac
cacgacagagttgtatcactcagcttatgtgctcgcaaagaatgctttatatccggctct
cttgatcaaactgttttgctttgggatcaaagggcagagaaatgccagggtcttttgcgt
gtacaaggaaagccaactactgcttacgacgaacaaggtgtagtttttgctattgcctat
ggaggttacataaggatgtttgattctcgcaaatatgagaagggtccttttgatatattt
tctgttggggaagacgtatctgacacaaatgttgtaaagttcagcaatgatgggagactc
atgttgttgacaacttctgatgggcatattcatgttcttgattcttttcgaggaacacta
ttatccacgtacaatgtaaaacccatttcaagcaattcaacgttggaggcatcttttagc
ccggagggaatgtttgtgatatcaggttcgggagatggcagtgtttatgcatggagtgta
aggagtggaaaagaggttgcaagctggatgagttctgaaatggaacctcccgtcataaag
tgggctccgggaagtctaatgtttgcgactggatcttctgaactgtcattttggatacct
gatttgtctaaactgggagcatacgtagacagaaagtag

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