Cucurbita pepo subsp. pepo (vegetable marrow): 111782062
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Entry
111782062 CDS
T05351
Name
(RefSeq) cleavage stimulation factor subunit 77
KO
K14408
cleavage stimulation factor subunit 3
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
111782062
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpep03019
]
111782062
Messenger RNA biogenesis [BR:
cpep03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
111782062
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Suf
HAT_PRP39_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
TPR_14
HAT_Syf1_CNRKL1_C
TPR_19
TPR_15
TPR_2
TPR_16
TPR_CcmH_CycH
DUF1993
TPR_8
ANAPC16
NRDE-2
Motif
Other DBs
NCBI-GeneID:
111782062
NCBI-ProteinID:
XP_023518607
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Position
LG19:1820318..1839697
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AA seq
767 aa
AA seq
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MTSEGSESKDKTASNKLLDDLKYNVEVAENVAKEAQRLPISEATPLYEQLLTVYPTAAKY
WKQYVEAHMIINNDDATKQIFSRCLLTCLHIPLWRCYIRFIKKVNERKGMEGQEETRKAF
DFMLSYLGVDISSGPVWMEYIAFLKSLPALSSQEESQRMTAMRKVYQRAIITPTHHIEQL
WRDYENFENSVSRQLAKGLISEYQPKFNSARAVYRERKKYVDEIDDNMLAVPPTGSPKEE
LQWMSWKRLIAFEKGNPQRIDSTSSNKRIIFTYEQCLMYLYHYPDVWYDYAMWHANNGSI
DAAIKVFQRALKALPGSDMLKYAYAELEESRGSLQSAKKIYESILGDGINATALTHIQFI
RFLRRNEGVEAARKHFLDARKSPNCTYHVYVAYAMMTFCLDKDPKIAHNIFEDGMKRFMN
EATYILEYADFLARLNDDRNIRALFERALSTLPLEESTEVWKRFVHFEQTYGDLASMLKV
EKRRKEALSQMGEDGASTLESSLQDIVSRYSFMDLWPCTSSDLDNLARQEWLAKNMSKNS
EKSILPSGAGFLDTGSAGLLSHSNPSTKVVYPDTSQMVIYDPSQKLGMLPTATASGLPAN
PITLSNPASVVSGGPTNVFDEILKATPAALIAFLANLPAVDGPTPDVDIVLSVCLESDIP
TVPSVKSGATPAQGSAGPVPTTSDSGTSKSHAFSNSSLKHTRDRQSAKRKDYDRQEDNES
TTVQSQPLPKDFFRIRQIQKARGATSSQTGSASYGSAISGDLSGSTG
NT seq
2304 nt
NT seq
+upstream
nt +downstream
nt
atgacatcagagggatctgaatcaaaggataaaacagccagtaataaacttttggatgat
ttgaagtacaatgttgaagtggcagaaaacgttgctaaagaggcgcagcgtttgccaata
tcggaggcaacaccattgtatgagcaactgctgacggtgtatcccactgctgctaaatat
tggaagcaatatgtggaggcacacatgatcattaataatgatgatgctacaaaacagata
tttagtcggtgcttattgacctgtcttcacattcctctttggcgttgctacatccgattc
attaagaaggtcaatgaaaggaaaggaatggaaggccaggaggaaaccagaaaagctttt
gattttatgcttagttatcttggtgttgacatatcatctggccccgtgtggatggaatac
attgccttcttgaagtcacttccggctctaagctcacaggaggagtcacagcgtatgact
gctatgcggaaggtctaccagagagctattatcactcctacccatcacattgagcaacta
tggagggattatgaaaattttgagaattctgtcagccgtcaactggccaagggactaata
tctgaatatcaaccaaaatttaatagtgctcgggcagtctatagggagaggaagaagtac
gtggatgagattgatgacaacatgcttgctgtaccaccaactggctccccgaaggaagag
ctgcaatggatgtcatggaaaaggctaatagcatttgaaaaaggaaatccccagaggata
gacagtacatcatcgaacaagcggattatattcacatacgagcagtgtcttatgtacctg
taccattatcctgatgtatggtatgattatgctatgtggcatgcaaataatggatcaata
gatgctgcaattaaagtatttcagcgagctttgaaggctcttcctggctcggatatgctc
aaatatgcttatgcagagctagaagaatctcgtggatcacttcagtcggcaaagaagata
tatgaaagcattttgggtgatgggattaatgcgactgcactgacacatattcaatttatc
cgtttccttagaagaaacgaaggagttgaggctgctcgcaagcactttttggatgctcgc
aagtccccaaattgcacatatcatgtttatgttgcttatgctatgatgaccttttgtctc
gacaaggatcccaagattgcacacaatatttttgaagatggaatgaaacggtttatgaat
gaagccacgtatattctcgaatatgcagatttccttgctcgattgaatgacgacagaaat
attcgggctttatttgagcgcgctttaagtaccttgcctctagaggaatccactgaggtt
tggaaacggtttgtccattttgagcaaacttatggagacctagctagcatgctgaaggtt
gagaaaagaagaaaggaggctctttctcaaatgggtgaagatggagcgtcaacactggaa
agttcattgcaagatattgtatcccggtacagttttatggatctctggccatgcacatct
agtgatctggataatttggccagacaagagtggctcgctaagaacatgagtaagaactca
gaaaaatctattctgcctagtggagctggttttttagatactggttctgctggtcttctg
agtcattcaaatccatctacaaaggttgtttatccagatacctctcagatggttatttat
gacccaagccaaaaattaggaatgcttccaactgcaacagcttcaggacttcctgctaat
cctatcaccttatcaaatcctgcttccgttgtgagtggaggaccaactaatgtatttgac
gaaatactaaaagcaacaccagctgcattaatagcatttcttgctaacttacctgccgtt
gatggtccgactccagatgttgatattgtactatcagtttgtctagagagtgacatacct
acagttccttcggtcaaatcaggggcaacaccagcccaaggctcggctggtcctgttcct
accactagtgattctggtacaagcaagtctcatgcattttcaaattcctccctaaagcat
accagagatagacaatcagcaaagagaaaagattatgacagacaagaggataatgaaagt
acaacagtccagagtcagccattgcctaaagatttcttcaggataaggcaaatccagaaa
gctcgaggtgctacttcttcccaaacaggttctgcttcctatggtagtgctatttctggt
gatctatctggtagcacaggttga
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