KEGG   Cucurbita pepo subsp. pepo (vegetable marrow): 111782813
Entry
111782813         CDS       T05351                                 
Name
(RefSeq) katanin p80 WD40 repeat-containing subunit B1 homolog isoform X1
  KO
K18643  katanin p80 WD40 repeat-containing subunit B1
Organism
cpep  Cucurbita pepo subsp. pepo (vegetable marrow)
Brite
KEGG Orthology (KO) [BR:cpep00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04812 Cytoskeleton proteins [BR:cpep04812]
    111782813
Cytoskeleton proteins [BR:cpep04812]
 Eukaryotic cytoskeleton proteins
  Microtubules
   Tubulin-binding proteins
    Microtubule severing proteins
     111782813
SSDB
Motif
Pfam: Katanin_con80 WD40 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_EML_2 WDR55 EIF3I Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd Beta-prop_EML ANAPC4_WD40 Beta-prop_SCAP Beta-prop_WDR75_1st WD40_MABP1-WDR62_1st Beta-prop_TEP1_C Beta-prop_SPT8 Beta-prop_DCAF4 NBCH_WD40 Beta-prop_EIPR1 WDR90_beta-prop_4th Beta-prop_IFT122_1st eIF2A Beta-prop_IFT140_1st WD40_RFWD3 Beta-prop_RIG_2nd Beta-prop_Vps41 Beta-prop_HPS5 Beta-prop_WDR19_1st Beta-prop_VPS8 Beta-prop_DCAF12 Beta-prop_IP5PC_F VPS8_N
Other DBs
NCBI-GeneID: 111782813
NCBI-ProteinID: XP_023519385
LinkDB
Position
LG20:complement(2367225..2374781)
AA seq 921 aa
MAKRGYKLQEFAAHSANVNCLRIGKKACRLFITGGDDYKVNLWAIGKSNSLMSLCGHTNP
VESVAFDSAEILVLAGASSGAIKLWDIEEAKMVRTLSGHRSNCTAVEFHPFGEFFASGSR
DTNLKIWDIRKKGCIHTYKGHTQGISTIKFTPDGRWVVSGGFDSAVKVWDLTAGKLMHDF
KFHEGPIRSIDFHPLEFLLATGSADKTVKFWDLETFELIGSTRPEAAGVRAITFHPDGRT
LFSGLDDSLKVYSWEPVICHDSVDMGWSTLGDICIHDGKLLSCSFYRNSVGVWVADVAHI
EPYGANPISGQKEPNDQKSNSAFKNSLGSKSIGAGLMTSNLQSMSPDYETKEIKNIYVDT
TGGKPVAPQKEESLTSPKVVFALDSKKISYDASKEQSPASRVEMKSNEVSRDKPPVVPCA
SPEVKDSPSSVRESITFSKTRRGMLLRPAHIRKPSNSKMDFEKLSVDSSRKADLERLPVE
DSVSICHTTSDLNKAPEPNLKTSVLSEETHKDSHRTNSNIISIEEKFEKIPSPSAETTSE
QESRNKSVESSKGTNPVKFVNGVAVVSGRTRSLVERFERRERTNDVQATISPPSVLESEK
TREQTNSFEAQVVTPQILETEKTHEQTNDCRVQEVAVSSLVSETEKTREETNNYEVQAVA
IPSHISETQKAREQNNDYEVRVMVPPRTPETRRTAPNYEGKTRNNYEAKARNNYEAKTTP
IPSRVSKTDKTDNFQKGEPQISGRDSTSANDRDVIEDLMQSHDVFLSTLRSRLTKLQVIR
HFWERNDLKGAINAMTKLPDHSVHADVISVLIEKMDVLTLDLFSCLLPVLVGLLDSKIER
HASLSMEILLKLVAVFGHVISSAVSAPPVVGVDLHAEQRVQCCKQCFTHLQKIQKILPSF
VRRGGSLARSAQELNLVLQQC
NT seq 2766 nt   +upstreamnt  +downstreamnt
atggcgaagcgtggatataaactacaggaatttgcagcacactcagcaaatgtcaactgt
ctaagaattgggaaaaaagcttgccgactgtttataactggtggagatgattataaagtc
aatctttgggcgattggaaaatctaattctttgatgagtctttgtggtcatactaatcca
gttgaatcagtagcttttgattcagctgaaattttggtgcttgccggagcttcatctggt
gcaataaagttgtgggatattgaagaggctaaaatggttcgcactctttctggtcacaga
tcaaactgcacggcagttgagtttcatccgtttggcgagttctttgcatccggttctaga
gacactaatctaaaaatatgggatatcagaaagaaaggttgtattcatacatacaagggg
cacactcaaggcatcagtactatcaagttcactccagatggtcgctgggtagtctctggt
ggatttgatagtgctgtgaaggtatgggatctaacggctggaaagctgatgcatgatttt
aagttccatgaagggcctattcgatccatagattttcatccacttgagtttcttcttgcg
acagggtcagcggacaaaactgtaaaattctgggatttggaaacttttgaattgattgga
tctacaagacctgaggctgctggagtacgtgcaatcaccttccatccagatgggaggacc
ctgttttctggtctggatgacagtctgaaggtatattcatgggagcctgtcatttgtcat
gattctgttgacatgggatggtcaacactaggtgacatttgcattcatgatgggaaactg
ttgagttgctcattttatcgaaactctgttggggtttgggtagctgatgtggcgcatatt
gagccttatggagctaatccaatatctgggcaaaaggagccaaatgatcagaaatctaat
tctgctttcaagaacagtctaggttcaaaaagcattggagctggtttgatgacttccaat
ctgcaatctatgtctcctgattatgaaacaaaggagataaagaacatttacgttgacaca
actggtggaaagcctgttgcaccacagaaggaagaatctttaacctccccaaaagttgta
tttgcattggattcaaagaagattagctatgatgctagcaaagagcaaagtcctgcatca
agagtagaaatgaaatctaatgaagtatcaagagacaaacccccagttgtaccttgtgct
agtcctgaggttaaagactcgccgagctctgtaagagaatctatcacattttccaagaca
aggcgtggaatgttactcaggccggctcatataagaaagccatccaatagtaaaatggat
tttgaaaaactatcagttgattcaagtagaaaagctgatcttgagagactgccagttgaa
gattctgtaagcatctgtcataccaccagtgatttgaataaagctccagaaccaaacttg
aaaacaagtgttctatccgaagaaacacataaagattctcatagaacaaattctaatatc
attagtatcgaggagaagtttgaaaaaatcccctctccatccgctgagacaacttcagaa
caagagagccgcaacaaatcagttgaaagtagcaaagggacaaatcctgttaaatttgta
aatggagttgcagttgtttctggaaggacgcgcagtctcgttgagaggtttgaaaggaga
gaacgaactaatgatgtacaggcaacaatttcaccaccttctgtccttgaatcagagaaa
acaagagaacaaactaatagctttgaagcacaggtggttacacctcagatccttgaaact
gagaagacgcatgaacaaactaatgactgtagagtacaggaagtggccgtatcttctctt
gtctctgaaactgagaagacgcgtgaagaaacaaataactatgaagtacaggcagtggct
attccttcacacatctctgaaactcaaaaggcaagagaacaaaataatgactatgaagta
cgagtaatggttcctcctcgtacccctgaaactaggaggacggctccgaactatgaagga
aaaacaagaaataactatgaagcaaaagcaagaaataactatgaagccaaaacaactcct
attccttcacgtgtctctaaaacagataaaaccgacaattttcagaagggagaacctcaa
atttctggaagagattctacctctgcaaatgatagggatgtcattgaagacttgatgcaa
tctcatgatgtattcttaagtacccttcgatcccgcttaacaaaattgcaggtgatacga
cacttttgggagcggaatgacttgaaaggtgccattaatgctatgacaaaacttccagat
cattctgtgcatgcagatgtgatcagcgttctcattgagaagatggatgtcttaactcta
gatttattctcttgcctacttcctgtactcgtgggtttattggatagcaagatagaaagg
catgccagtttgtcaatggagattctattgaagcttgtagcagtttttggtcatgttata
agctcagcagtatcagcacctccagtagttggtgttgaccttcatgcagagcagagggta
caatgctgcaagcaatgcttcacccacctgcaaaagattcaaaaaatccttccatcattt
gtaaggagaggtggttcactagccagaagtgctcaggaattgaatttagtacttcaacaa
tgttaa

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