Cucurbita pepo subsp. pepo (vegetable marrow): 111782818
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Entry
111782818 CDS
T05351
Name
(RefSeq) syndetin-like isoform X1
KO
K23288
syndetin
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cpep04131
]
111782818
Membrane trafficking [BR:
cpep04131
]
Protein recycling
Others
EARP complex
111782818
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps54_N
Syndetin_C
Motif
Other DBs
NCBI-GeneID:
111782818
NCBI-ProteinID:
XP_023519395
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Position
LG20:5996080..6040429
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AA seq
1086 aa
AA seq
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MQPNLFPFGSVLGNPSAFDGDLSEGFETSRFLFFVPFFLLQGGGMDLSKVGEKILSSVRS
ARSLGLLHTTSDRPEVPARAVAAAAVARALAVLPPHQRFGLSSSSEELSSIYGSRIHGQE
VEELEDVFYEEDFDPVRHILEHVPSEESDLEYFEKQATKRLAQLDKVAERLSRHLMEHHE
VMVKGMHLFRELEKDLKIANVICRNGKRHLNSSMLAVSRDLIVNSNSKKKQALLDMLPIL
SELRHAVDMQSMLEILVEEGNYSKAFQVLSEYLQLLDSFSELSVIREMSCGIETWLGRTL
QKLDSLLIEVCQEFKKEAYLTVVDAYALIGDVSGLAEKIQSFFMQEVISETHSALKDIVQ
EDQDVHIQNSRLTYSDLCFRIPESKFRLCLLKTLAVLFTLMCSYYQIFSFQLDTKDSIDQ
TPNMKQQEDNYDINLRDTPESTINVSSVGTAAITNSDGGDLNRGSPTDSSTVSTSGSPWY
HLRKDAINFVSQTLQRSRKNLWQLSTSRVSVLLSSAAVCSTSIHQFLKNYEDLNVFILAG
EAFCGVEAVEFRQKLKIVCENYYVAFHKQSMHALKMVMEKENWLTLPPDTVQVVSFSGLV
GDGAPLFVHCDGNSSKGKAPRSDKSTSSVSTGMDRSGFLRWLKNGNPFLLKQMHTCKEGI
PNGELDGSAGEGFDRSNSSPMKYTDKLSNGANTVPEDESEDLLADFIDEDSQLPSRILKP
RLSLNHSSNHNNDEITAQTGSSLCLLRSMDKYARLMQKLEIVNVEFFKGMCQLFAVFFYF
VYETFGQLNTTSGGKGFPDSLNYKLKTALSRAAQDCDQWRRPHSSSPSASNSTFAFNEVT
PSPPGSSLGYFHGTSLGLKERCAGADSLSLVARIMHRSKAHIQSMLLQTNVAVIEDFYVH
LLDAVPYLIEHIHKNTARLLLHVNGYVDRIANAKWEVKELGLEHNGYVDLLLGEFKHYKT
RLAHSGVRKEVQDLLLEYGLDIVAETLIEGISRVKRCSDEGRALMSLDLQVLINGLQHFV
SENVKPKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQVIGLVNLVASMKGWKRKTRLE
ILEKIE
NT seq
3261 nt
NT seq
+upstream
nt +downstream
nt
atgcagccaaatctgtttccatttggcagtgttctcggaaacccttcggcgttcgatggt
gatttgagcgaaggattcgagacttccaggtttctcttctttgttccgttttttctgttg
caaggaggtggaatggacttgtccaaggttggggagaagattttgagctcggtgaggtcg
gctagatcgcttggacttcttcataccacttcggatcgtccggaggttccggcacgtgct
gtggctgcggcagctgttgcccgtgcacttgcagtattgcctcctcaccagagatttggt
ctctcatctagctcggaagaactgagctcaatatatggcagtagaattcatgggcaagaa
gtagaggaactagaggatgttttctatgaagaggactttgatccggttaggcatatatta
gagcatgttccctcagaagaaagtgatctggaatatttcgagaaacaggctaccaagaga
ttggctcaacttgataaagtggctgaacgtttgtctcgccatttgatggagcatcatgaa
gtgatggtgaaggggatgcatttgttcagggagttggaaaaagacttgaaaattgcgaac
gtcatctgcagaaatgggaagagacacctaaattcgtcaatgcttgcagtctctagagat
ctcattgtaaactctaactccaagaagaaacaagcacttctggatatgcttccaattttg
agtgagcttcgtcatgctgtggacatgcaatcgatgcttgagatccttgttgaagaggga
aattattccaaggcttttcaggtcttatctgagtatttgcagctactggatagtttttca
gagctttcagtaattcgagagatgagctgtggcattgagacttggcttggaagaacgcta
caaaagttggattcgcttttgatagaagtctgtcaggagttcaagaaagaggcttattta
accgtggttgatgcctatgcgctaataggagatgtctctggccttgctgaaaagatacaa
agcttttttatgcaggaagtaatatcagaaacccattctgccttgaaagacattgtgcaa
gaggatcaggatgtacatatacaaaatagtaggcttacatacagcgacctatgctttcgg
attcctgaatcaaagtttaggctgtgtttattaaaaacactagctgtcttatttaccttg
atgtgctcatattatcagatctttagcttccaactggataccaaggactcaattgaccaa
actcctaacatgaagcaacaagaagataattatgacattaatttaagagatacacctgaa
tcaacgatcaatgtctcttcagtggggactgcagcgattacaaattctgatgggggtgat
ctcaatagagggtccccgacagatagcagcacagtatcaaccagtggttctccctggtac
catctgagaaaagatgctataaattttgtttcccaaaccctacaaagaagccgtaagaac
ctttggcaactatctactagccgtgtctcagtactgctttcttctgctgctgtttgttca
acgagcattcatcaatttttgaaaaactacgaagatctcaacgtcttcatattggctgga
gaagccttctgtggagttgaagcagttgaatttaggcaaaagttgaagattgtttgtgaa
aactattatgtggctttccataagcagagtatgcacgctctaaagatggttatggaaaaa
gagaattggcttacactgccaccagatacagttcaagttgttagtttttctggactggtt
ggtgatggagcacctttgtttgttcactgtgatggtaactcatctaagggcaaggcccca
cgttcagacaaatcaacaagttcagtcagtacgggcatggatagaagtggttttttgcgg
tggctcaaaaatggaaatccatttttacttaaacaaatgcatacatgtaaggaaggcata
ccaaatggagaactggatggaagtgcaggtgaaggttttgataggagtaattcctctcca
atgaagtatacagacaaactttcaaatggtgctaatactgttcctgaagatgaaagtgaa
gatcttttagccgactttattgatgaagatagtcaactcccaagcagaattttgaaaccc
agactttcactaaaccactcttctaaccataataatgatgaaattacagcacaaacagga
tcatctctatgccttttaaggtccatggacaagtatgcaaggcttatgcagaaactagag
atagtgaatgttgagtttttcaagggaatgtgccagttgtttgcagtgttcttctatttt
gtatacgagacttttggccagcttaacactacttccggtggaaaagggtttccggactct
ctcaattataagttgaagacagctttgtcacgagctgcacaggattgtgatcagtggaga
agaccccattcgtcttccccatcagcttcaaattcgacgtttgctttcaatgaagttacc
ccaagccctcctggcagtagcttaggttactttcatggaacatctcttggtctcaaggaa
aggtgtgcaggtgctgactcattatcccttgtggcaagaataatgcataggtctaaagct
catattcagtccatgctcctgcaaactaacgtggccgtaattgaagacttttacgtacat
ctgttggatgccgttccatatctcattgagcatattcataagaacactgcaagactgctt
cttcatgtcaatggttatgttgaccggatagccaatgcaaaatgggaagtaaaagagctt
ggactggagcataatgggtacgtcgacttgttattgggagaattcaagcattataaaaca
aggctggctcatagcggagttcgcaaggaggttcaagacctcctcttggagtatggtctg
gatattgttgcagaaacacttattgaaggtatatcacgagtaaagcgatgttccgatgaa
ggacgtgcgctcatgtcattggatcttcaggttttaatcaatggcttgcaacattttgtt
tctgagaatgtgaagcctaagttacaaatggttgagactttcattaaggcgtactacctt
ccagaaaccgaatatgtacactgggcacgagctcacccggaatacagtaagagccaagtt
atcggtttggttaacctcgttgcatcaatgaaagggtggaagagaaaaacccggttggaa
atactggaaaagatcgagtga
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