Cucurbita pepo subsp. pepo (vegetable marrow): 111783279
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Entry
111783279 CDS
T05351
Name
(RefSeq) serine/arginine repetitive matrix protein 1-like isoform X1
KO
K13171
serine/arginine repetitive matrix protein 1
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03013
Nucleocytoplasmic transport
cpep03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
111783279
03015 mRNA surveillance pathway
111783279
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpep03019
]
111783279
03041 Spliceosome [BR:
cpep03041
]
111783279
Messenger RNA biogenesis [BR:
cpep03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
111783279
Spliceosome [BR:
cpep03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR-related proteins
111783279
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PWI
Motif
Other DBs
NCBI-GeneID:
111783279
NCBI-ProteinID:
XP_023519967
LinkDB
All DBs
Position
LG20:7546690..7552388
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AA seq
892 aa
AA seq
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MSGGFFRGTTADQDTRFSNKQAKLLKSQKFPAELDQLVDTTKVKMDVIRPWIATRATELL
GFEDEVLINFIYGLLDSKEVNGKEVQIQLTGFMEKNTVKFMKELWTLLLSAQKNASGVPQ
QFLDAKEEEIRKKKAETDFLANEIQKKREKEHKEIEEQRSKNMDDGAEKVADFVLEPTSM
NRSEDEEEAEKSNGVRGRSSDGHKSRSMSRSPQRLRDSFSQERLSISPRRRDHRDSSSPR
HRSSDSRRSRSTSHRKSLSPVVHQLRSPSQHSSPSPHCKSPHQLSSSGQRRSSSPAQRRS
PSLDKHNRSPSPSEHCRSLSPIRHSRLPSPARHRRSPSPEWRRRSPSPEWRRRSPSPKWS
RRSPSPRRRRRSPSPRRRRRSPSPRRRRRSPSPRRRRRSPSPRRRHRSPSPVRRRRSPTP
VRRRRSPTPVRRRRSPTPVRRRWSPSPIRSRRSPSSPRHYRSPSPHRRKSPSLVRRHRSP
SPAHYRRSPSPIKRHPSHSPRQRSMSPSSSPIQKWDRPSPHDHHITPSPLERRSPSSPAR
LKRSSLSQHRSISPYDRSYSSKERGNRSPVKVKSPRVRTSDEKSYSRRGKAKETEARTVE
NNNNRREVSDSDMEEGYKHKTRSKGRKRHKRSNRSDTSSERRHRRSDRRDTYSERRHRRS
DRRDTYSERRHRRSDRRDTYSERRHRRSDRRDTYSERRHRRSDRRDTYSERRHRRSDRRD
TYSERRHRRSDRRDTYSERRHRRSDRRDTYSERRHRRSDRRDTYSERRHRRSDRRDTYSE
RRHRRSDRRDTSSEDSYDSELERKEARRRKEEERRCWKEKKRQRREEHRRKKEKRRAEKT
KAKTFSYDCSEECCPSDSAYEAEQRRLEVELRNKALEAFNARKGRRHNRSSE
NT seq
2679 nt
NT seq
+upstream
nt +downstream
nt
atgtccggcgggtttttccggggtacgactgcggaccaagacactcgtttttcaaacaag
caagcaaagctgctgaagtcacagaagttccctgctgaactagaccaactggttgatacg
acaaaggtgaagatggacgttatcaggccgtggattgctacgagggcgactgagcttctt
gggtttgaagatgaagttcttattaacttcatatatggccttttggatagcaaggaagta
aatgggaaggaagttcaaatacaactcactgggttcatggaaaagaacactgtgaagttt
atgaaagagctttggacactacttctaagtgcccagaagaacgccagtggtgtacctcaa
caatttttggatgccaaggaagaagaaattaggaagaagaaggcagagacagattttctt
gcaaatgaaattcagaaaaagagagagaaggaacataaagaaattgaggagcagagatca
aagaatatggacgatggggctgaaaaggtggccgattttgtattggagcctacgtcaatg
aatcgttcagaggacgaggaagaggctgaaaagagtaatggtgttaggggaagaagcagt
gatggacacaagtcaaggagcatgtctcgatcacctcaacggctacgagactccttttcg
caagaaagattatctattagcccacgtcgtagggaccatcgtgattcatcctctcctcga
catagatcatctgattcaagaaggtctagatctacttcacatcgtaaatctctttctcca
gtagtgcatcagttgcggtctccttctcaacatagttcaccatctcctcattgtaaatca
ccacatcaactatcttcgtctgggcaacgtcgatcatcgtcacctgcacaacgaaggtca
ccatcacttgataagcataatagatcaccatcaccatctgagcattgcaggtcactatca
ccaattagacacagtcgtttgccttcacctgctcgacatcgtagatcaccatctcctgaa
tggcgtcgtagatcaccatctcctgaatggcgtcgtagatcaccatcaccaaaatggagt
cgtaggtcaccatcaccaagacgacgtcgtaggtcaccatcaccaagacgacgtcgtagg
tctccatcaccaagacgacgtcgtaggtctccatcaccaagacgacgtcgtaggtctcca
tcaccaagacggcgtcacaggtctccatcacctgtacgacgccgaaggtcaccaactcct
gtacgacgccgaaggtcaccaactcctgtacgacgtcgaaggtcaccaactcctgtacga
cgtcgatggtcaccatctccaatacgaagtcgaaggtcaccatcgtcgccgcgtcattac
aggtcaccatctccacaccgtcgcaaatcaccttcccttgtgcgtcgtcatagatcgcca
tctccagcacactaccggagatcgccctcacctattaaacgccacccatctcattctcca
aggcaacgctctatgtcaccttcatcctcaccaatacagaaatgggataggccatcacca
catgatcatcacataacaccctctcctctagaacgtagatctccatcatctccagcacgt
ctcaagagatcaagcctttctcaacatagatccatttcaccatatgatcggagttattca
tcaaaggagcggggaaaccgatcgcctgtcaaagtaaaatctcccagggtcagaaccagt
gatgaaaaaagctactcacgccgaggtaaagccaaggaaactgaggctcggactgtcgaa
aataataataaccggcgcgaggtctcagattctgatatggaggaaggctataagcataaa
accagaagtaagggtaggaaaagacacaaaagatcaaacaggagtgacacttcttcggag
agaagacacagaagatcagacaggcgtgacacttattcagagagaagacacagaagatca
gacaggcgtgacacttattcagagagaagacacagaagatcagacaggcgtgacacttat
tcagagagaagacacagaagatcagacaggcgtgacacttattcagagagaagacacaga
agatcagacaggcgtgacacttattcagagagaagacacagaagatcagacaggcgtgac
acttattcagagagaagacacagaagatcagacaggcgtgacacttattcagagagaaga
cacagaagatcagacaggcgtgacacttattcagagagaagacacagaagatcagacagg
cgtgacacttattcagagagaagacacagaagatcagacaggcgtgacacttattcagag
agaagacacagaagatcagacaggcgtgacacttcttcggaagacagctatgatagtgaa
ttggagaggaaggaggcccggagaaggaaggaggaggagaggaggtgttggaaggagaag
aagcgacaaagacgtgaagagcatcgacgtaaaaaggaaaagcggcgtgctgagaagacg
aaagctaagactttcagttatgattgctcggaagagtgttgtccgagtgatagtgcgtat
gaggccgagcagagaaggttagaggtcgagttgaggaataaggcactggaagcattcaat
gcaaggaaagggagaaggcataatagatcttcagaatag
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