Cucurbita pepo subsp. pepo (vegetable marrow): 111783399
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Entry
111783399 CDS
T05351
Name
(RefSeq) 30-kDa cleavage and polyadenylation specificity factor 30-like
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
111783399
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpep03021
]
111783399
03019 Messenger RNA biogenesis [BR:
cpep03019
]
111783399
Transcription machinery [BR:
cpep03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
111783399
Messenger RNA biogenesis [BR:
cpep03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
111783399
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
zf-CCCH_12
zf-CCCH_2
Torus
zf-CCCH_3
Motif
Other DBs
NCBI-GeneID:
111783399
NCBI-ProteinID:
XP_023520093
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All DBs
Position
LG20:3311820..3317870
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AA seq
708 aa
AA seq
DB search
MEDSEGVLSFDFEGGLDAGPTNPAATSSLPIIQSDSSFLPAASAVSNSVAGAVGPAATAD
APGAPTGNVGNRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECREQ
DCVYKHTNEDIKECNMYKFGFCPNGSDCRYRHAKLPGPPPPVEEILQKIQQLGSYNYGSS
NKFFSQRGVGLSQQNEKSQIPQGPAPVTQGVLGNPSAAESADVQQPQAQQTAQQTSQTQT
QGLSNGQPNQLNTTATSLPPGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFD
SADNVILIFSVNRTRHFQGCAKMMTRIGGSVSGGNWKYAHGTAHYGQNFSLKWLKLCELS
FQKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGELMAVSVAAELKREEE
KARGVNPGIGSENPDIVPFEDNEEEEEEDSEEEEEEESLGQSVGLPAQGRGRGRGIMWPP
HMPMGRGPRPFHGMPGFPPGMMGPDGLPYGPVTPDGYPMPDMFGMAPRGFGPYGPRFPGD
FMNPPAAMMFRGRPSQPGVMFPPGGFGMMMGQGRGPFMGGMGVPGPNPARPGRPMGVSPL
YPPPALPSSQNINRAAKRDQRGGPGSDRNDRYITGPDQNKGQEIPRHDEEMQYKQSKTYP
DEQYGLGTTSRNEESESEDEAPRRSRHGEGKKKRRGSEGGDATAISDE
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
atggaggattccgagggcgttctcagcttcgatttcgagggcggcctcgatgccggcccc
actaaccccgccgccacctcctccttacccataatccagtcagattcttctttcctcccc
gccgcttccgccgtctccaactccgttgccggcgccgtcggtcctgctgctacagctgat
gctcctggtgccccaaccggcaacgtcgggaatcggaggagcttccggcaaacggtttgc
cggcattggcttcgaagcctctgtatgaagggcgacgcctgtggcttccttcaccagtat
gataagtctcggatgcccatttgccgattcttccgtctctatggcgagtgccgtgagcag
gattgcgtgtacaaacataccaatgaagatattaaggagtgtaatatgtacaagtttggt
ttctgtccaaatggttctgattgtcgatataggcacgcaaagctgcctggacctccacct
ccagtggaagaaatccttcagaaaatacagcaattaggttcatacaattatggttcctca
aacaaattcttttcacaacgtggagttggcttatcccaacagaatgaaaaatctcagatt
cctcagggtccggcccctgttactcaaggagttttaggaaacccttctgcagcagaatct
gctgatgtccaacagccgcaagctcaacagactgcacaacaaaccagccagactcagaca
caaggtctttctaatggccagcccaatcaactaaacacaactgcaacgtctttgcctcca
ggaatatctaggtactttattgttaaaagttgcaaccgcgagaatttggaattatctgta
caacaaggggtatgggcaactcaaagaagcaatgaagccaaacttaatgaagcttttgat
tctgctgataacgttattttgattttctcagtcaatcggactcggcattttcagggttgt
gcaaagatgatgaccagaattggtggatctgtcagtggaggcaattggaaatatgcacat
ggaactgcacattatgggcaaaacttttcactcaaatggctgaagttatgtgaactatcc
ttccagaaaactcgtcatttgaggaatccatataatgaaaacttaccagtaaagatcagt
agagattgccaagagctagagccctctattggtgagcagctggcttctttgctttatctt
gagccagatggtgaactcatggccgtctcagtagcagcagaattgaaacgagaagaggag
aaagcaaggggagttaatcctggcattggaagtgagaacccagatattgtcccgttcgag
gataacgaagaagaggaagaggaagacagtgaagaggaggaggaggaggagagccttggc
cagtccgttggtttaccagctcagggcagaggaaggggcagaggaatcatgtggcctcca
catatgccaatgggacgtggtcctagaccctttcatggaatgccgggttttccacctggg
atgatgggtccggatgggctgccttatggtcctgttacacctgacggatatcccatgcct
gacatgtttggaatggctcctcgtggttttggtccatacggtcctaggtttcccggtgat
tttatgaatcccccagctgctatgatgttccgtggacgaccttctcaacctggggtcatg
ttccctcctggtggatttgggatgatgatgggtcaaggacgtggtccctttatgggtggg
atgggggttcctggtcctaacccagctcgacctggtcgtcctatgggcgtgtctccgttg
tatccacctcctgcattaccgtcatctcaaaacatcaatcgagctgctaagagggaccaa
aggggaggaccgggtagtgatcggaatgatagatatattacaggtccagaccaaaacaag
ggccaggagatacctagacatgatgaagaaatgcaatataagcagtcaaaaacttatcct
gatgagcaatatgggctaggaaccacctctaggaatgaagaaagtgaaagtgaggacgag
gcacctcgacgatcgaggcatggagaagggaagaagaagcggagaggctcggaaggagga
gatgcaactgcaatctctgatgagtga
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