Cucurbita pepo subsp. pepo (vegetable marrow): 111784697
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Entry
111784697 CDS
T05351
Name
(RefSeq) regulator of nonsense transcripts 1 homolog isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03013
Nucleocytoplasmic transport
cpep03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
111784697
03015 mRNA surveillance pathway
111784697
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpep03019
]
111784697
Enzymes [BR:
cpep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
111784697
5.6.2.5 RNA 5'-3' helicase
111784697
Messenger RNA biogenesis [BR:
cpep03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
111784697
mRNA cycle factors
Common to processing body (P body) and stress granule
111784697
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
NPHP3_N
Helicase_RecD
UvrD-helicase
nSTAND3
ATPase
PhoH
SRP54
AAA_16
AAA_22
Ribosomal_S13_N
AAA_32
AAA_25
AAA
Motif
Other DBs
NCBI-GeneID:
111784697
NCBI-ProteinID:
XP_023521078
LinkDB
All DBs
Position
Unknown
AA seq
1268 aa
AA seq
DB search
MDSQQNNLFETASQPDTGNDAYTFLEFNTQGEDFDYPEFRDPIRSPVAWPTPSDSLADHT
DRGGGSDHQSDASPVSAAPGSATKGRTGGDLGNSGGNNQMVDALTAGMSGLTFEDAGDDD
NYEFGKGNFTEHACRYCGVSNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAKHKE
VCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLSVNALKDMNWDLS
QWCPLIDDRCFLQWLVKIPSEQEQLRARQISAQQINKIEELWKTNPDASLEDLEKPGVDD
EPQPVALKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNVTVRWDIGLNKKRVAYFVF
PKEDNELRLVPGDELRLRYSGDAAHPAWHSVGHVIKLTAQEEVALELRASQGVPVDIVHG
FSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVEVQMVRNTLPRRFGAPGL
PELNASQVFAVKSVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVD
QLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSERSELHKLQQLKDEQGE
LSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLSNFRFRQVLIDESTQATEPEC
LIPLVLGAKQAVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGVKPIRLQVQYRMHP
SLSEFPSNSFYEGTLQNGVTINERQSTGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLN
RTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASV
DSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWN
SLLTHYKEHECLVEGPLNNLKQSMIQFQKPKKIYNDRRLFFAGGPGVVPNDNFGPVAPSG
SNADRRSGRGRGSYFPPHLPNGAQKPGVHASGYPMPRVPIPSFHGGPPQPYAIPTRGAVH
GPVGAVPHVPQPGSRGFGAGRGNAGAPIGSQFPNQQASQQNIGNIGSTFNFPGLESPNSQ
PSVGGPLSQLGFVNNMPVQPPNQTFREGYSMGGISQDFLGDDFKSQGSHVPYNVTDFSTQ
ASQTGYAIDYVSQGAQGGFPGSFLNQNSQSGYSRFGTGNDFMSQDYMNHGSQGLFTQVGF
SDPSLDEASQSHYNVANANPLQSQQGMMNSLYSQPFAHYNTQPSTVQAPPQLPQQGQSSQ
NQKIHFSG
NT seq
3807 nt
NT seq
+upstream
nt +downstream
nt
atggattcgcagcagaacaatttgtttgaaacggcatctcaacctgacacgggaaatgac
gcttacacatttcttgagttcaatacacagggggaagacttcgattatccagaatttcgt
gacccaattaggtcccctgtagcgtggccgactccttccgattcgttagccgatcatacg
gaccgcggtggggggtcggaccaccagtctgatgcgtctccggtttcggctgcgccggga
agtgctacgaaaggccggactggaggtgatttggggaatagtggtggtaataatcaaatg
gttgacgcattgacggccgggatgagtgggttgacgtttgaggatgctggggatgatgat
aattatgagtttgggaaggggaatttcacggagcatgcttgtaggtattgtggggtttcg
aacccggcttgcgttgtgaggtgtaacgtaccgtcgtgccgtaaatggttctgtaattcg
cgagggaacacgtctgggtcgcatatcgtgaatcatctggtccgggctaaacataaggaa
gtttgtcttcataaagacagtcctctgggagaaacaattcttgagtgttacaattgtgga
tgtcgaaatgttttcctccttggatttatctctgcaaagacagaaagtgtggttgttcta
ctttgtagggaaccttgcttaagtgtaaatgctctgaaggatatgaattgggacttgagt
caatggtgccctctaattgatgataggtgcttcttgcagtggctagttaagattccttct
gagcaagagcagttgagggcacgccaaattagtgcacaacaaataaataagattgaggag
ctttggaagacgaacccagatgcgtcacttgaagatcttgaaaaacctggtgtggatgat
gaaccacagcctgtagcattgaaatatgaggatgcatatcagtatcaaaatgtatttgca
cctcttatcaagctggaagccgactatgataagatgatgaaagaatctcaaagcaaggat
aatgtcaccgtacgctgggacattggccttaacaagaagagggtagcctattttgtcttt
ccaaaggaggataatgagttgcgtcttgtacctggagatgaattgaggttacgttattct
ggtgatgcagctcatccagcctggcattctgtgggacatgtgatcaagctaactgcacag
gaagaggttgcacttgagcttcgtgctagtcagggggttccagttgacatcgtccatggt
tttagtgttgattttgtgtggaagagtacaagcttcgaccgaatgcagggagctatgaag
acatttgcagttgatgagaccagtgtcagtggttatatctaccatcacttattaggacat
gaagtggaagtccagatggttcgcaatacacttcctcgtcggtttggtgctcctggtctc
ccggagctcaatgcatcccaagtttttgctgtaaaaagtgttctacagaagccaataagc
ttgattcagggtcctccgggtactgggaaaactgtaacttctgctgccatagtgtatcat
atggccaaacaaggccaagggcaggttctggtctgtgcgcccagtaatgtggctgtggac
cagctggcagagaagataagtgcaactgggttgaaggttgttagactatgcgcaaaatca
agagaagctgtaagttctcctgtggaacacttgacccttcactatcaggttcgacatctt
gacacatctgaaagaagtgaacttcataagttgcaacaattgaaagatgaacaaggagag
ttgtctagcagtgatgagaaaaaatataaagcccttaagagagctacagagagggaaatt
tcacagagcgcagacgttatttgttgcacatgtgttggtgctggagatcctcgcttgtca
aattttagatttcgtcaggttcttattgatgagtcaactcaggcaacagaacctgaatgt
ctcattcctcttgttcttggagcaaagcaggctgttcttgttggtgaccattgccaactg
ggacctgttattatgtgcaaaaaagcagcacgtgcaggactggcccaatccctttttgag
cgtctcgttctccttggtgtgaaaccaattaggttgcaggttcaatatcggatgcatcca
tcactttctgagtttccttctaatagcttctatgagggcacgctacaaaacggagttacc
atcaacgaaaggcaatcgacaggcattgacttcccatggccagttcccaaccgtccaatg
ttcttctacgtccagatgggacaagaggagataagtgccagtggaacttcctacctaaat
agaactgaggcagcaaatgtagaaaaaattgtgactactttcttaaggagtggtgtagtc
cctagtcagattggagttatcaccccgtatgagggacaaagagcatacattgtaaactat
atgtcaagaaatggtgctctcagacagcaactttacaaagaaattgaggttgcaagcgtg
gattcatttcaaggaagggaaaaagattatatcatattgtcatgtgtgaggagtaatgaa
catcagggcattggattccttaacgatcctcgcagactcaatgtggctttaacacgagct
cgatatggtattgtcattcttggaaacccaaaggttttgagtaaacaaccactgtggaat
agcttattaacacattacaaggaacatgagtgcttggttgagggtcctctgaataactta
aaacaaagcatgattcagtttcagaaacctaaaaagatatacaatgatcgtcgccttttc
tttgctggtgggcctggagttgtgcccaatgataattttggacctgttgccccatctggc
tctaatgctgatagaagaagtggtcgtggtagaggttcgtactttcctcctcacctgccc
aatggtgcccaaaagcctggagtgcatgcttctggttatcccatgccacgagttcccatc
ccttcatttcatggtggtcctccgcagccgtatgcaatcccaactcgtggagctgtgcat
ggaccagttggtgctgttcctcatgttcctcaaccaggaagtaggggttttggggcaggg
cggggaaatgcgggtgctcctattggtagccagtttccaaatcagcaagcctctcaacaa
aatattggaaatattggttccacttttaactttcctggtttggagagtcccaatagccaa
ccatcagtgggtggtccattgtctcaacttggttttgttaacaatatgcctgttcagcca
cctaaccagacgtttcgtgaggggtactccatgggaggaatttctcaggacttcttgggt
gatgactttaaaagccagggatcgcatgttccatataatgttactgatttctccacacag
gcctctcaaactggatatgccattgattatgttagtcaaggagcacagggtggctttcca
gggagcttcctgaatcagaattctcaatctggatattcccgttttggaacaggaaacgat
ttcatgtcacaggattacatgaatcatggttcacaaggtctattcacgcaagttggtttt
agtgatccttcactagatgaagcctctcaaagtcactataacgtggccaatgcaaatcca
ctacaatcccagcaggggatgatgaactctctctactcccagccctttgcacattacaac
acacagccctctaccgtgcaggccccaccacagctgcctcagcagggccagagctctcaa
aatcagaaaattcactttagtggttga
DBGET
integrated database retrieval system
