KEGG   Cucurbita pepo subsp. pepo (vegetable marrow): 111785334
Entry
111785334         CDS       T05351                                 
Name
(RefSeq) protein ROOT INITIATION DEFECTIVE 3
  KO
K14829  pre-rRNA-processing protein IPI3
Organism
cpep  Cucurbita pepo subsp. pepo (vegetable marrow)
Brite
KEGG Orthology (KO) [BR:cpep00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:cpep03009]
    111785334
Ribosome biogenesis [BR:cpep03009]
 Eukaryotic type
  Pre-60S particles
   5-FMC complex
    111785334
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz Beta-prop_EML_2 WD40_WDHD1_1st Beta-prop_EML EIF3I WDR55 Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd Beta-prop_TEP1_C NBCH_WD40 Beta-prop_DCAF4 Beta-prop_WDR90_POC16_2nd WDR90_beta-prop_4th WD40_MABP1-WDR62_2nd Beta-prop_IP5PC_F Beta-prop_VPS8 ANAPC4_WD40 Beta-prop_HPS5 WD40_MABP1-WDR62_1st Beta-prop_RIG_2nd Beta-prop_IFT140_1st WDR54 Beta-prop_SPT8 Beta-prop_Vps41 Beta-prop_SCAP Beta-prop_LRRK2 Beta-prop_IFT122_1st Beta-prop_WDR75_2nd Nucleoporin_N Beta-prop_WDR19_1st PROPPIN DUF465
Other DBs
NCBI-GeneID: 111785334
NCBI-ProteinID: XP_023521513
LinkDB
Position
LG02:825561..829907
AA seq 443 aa
MVLVVASSSVDSGIGCWDLHTGAEQLRYKSCASPAHGLVCVGERFLACSQLRDPAATSGS
VLYWSWFKPQVEVKSFPAEPIMALASNNEGTYIIGGGFSGDIYLWEVMSGRLLMKWHAHY
RAVTCLVFSEDDSLLISGSEDGCVRVWSLLKVFDDGWQRESKHLYEHSFTGHNLPVTDIV
IGYGGSNAIIVSSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKI
YTAALNAKSPSSSDYGLHILGSLSNQSKSVTSLAYCSSGNLLISGSEDGAIKVWDTRTNN
IIRVLKHSKGPVNNLLIVRQQLLPTSQLNPTSQGSLRKHRSLLPPALAKFGNSKDDDEDT
GVIIGRSGPPVESMGFSPISSHVMDNQITELQQQGSAATGMELERLKRDYGKSMQMQQQW
RKLYDNLHQYCVNELLDGDQTKI
NT seq 1332 nt   +upstreamnt  +downstreamnt
atggtgctagtggtcgcttcgtcgtctgttgattcggggattggttgttgggacctccac
acgggtgcggaacaactacgttacaagtcttgtgcttctcctgcacatggtcttgtttgt
gttggtgaaaggtttctcgcatgctctcagcttcgtgatcccgctgccacctcaggctcc
gtactctactggtcttggtttaagcctcaagtagaagttaagagctttccggctgaacca
ataatggcattggcttccaacaatgagggtacatatatcattggtggtggtttctctgga
gatatatacttgtgggaggttatgagcggtagactgcttatgaaatggcatgctcattat
agggcagttacttgcctagtattctctgaagatgactccctgctaatctctggctctgaa
gatggctgcgttagagtttggtcccttctaaaggtatttgatgatggatggcaaagggaa
tcaaaacatttgtatgagcatagtttcactgggcataatctacctgttactgacattgtt
attggttatggaggatccaatgctattatagtctcttcctctgtggatcgtacttgtaag
gtgtggagcttatctaaggggaaattattaagaaatatcatatttccttcgatcattgat
gcaattgctttggatcccggtgaacatgtcttctatggtggtggtagagatgggaagatc
tacactgctgcgcttaatgctaaaagcccatccagcagtgattatggattgcatattctc
ggctcattatcaaatcagagcaagtctgttacttccttggcatactgctcaagtggtaat
ttattgatctctggatctgaggacggagcaatcaaagtttgggataccagaaccaataat
attattcgtgttctcaaacattcaaaaggtcctgtaaataatttacttattgttcgacaa
cagctcctcccgacttcacagctaaatccaacctcccaaggttctttgagaaagcatcga
tcactattacctcctgcccttgcaaaattcggaaactcgaaggacgacgatgaagacact
ggtgttatcattggtcgatcaggtcctcccgtggaatccatggggttttcccccattagt
tctcatgtgatggataatcaaatcacagaacttcagcaacagggttctgctgccacagga
atggagttggaaagacttaagcgtgattatggaaaatccatgcaaatgcaacagcagtgg
agaaaactgtacgacaatttacatcaatattgtgtaaatgagcttctggatggcgatcaa
actaaaatttag

DBGET integrated database retrieval system