Cucurbita pepo subsp. pepo (vegetable marrow): 111786360
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Entry
111786360 CDS
T05351
Name
(RefSeq) SWI/SNF complex subunit SWI3D-like
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
111786360
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpep03021
]
111786360
03036 Chromosome and associated proteins [BR:
cpep03036
]
111786360
Transcription machinery [BR:
cpep03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
111786360
Chromosome and associated proteins [BR:
cpep03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
111786360
PBAF complex
111786360
GBAF(ncBAF) complex
111786360
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
ZZ
Myb_DNA-bind_6
Motif
Other DBs
NCBI-GeneID:
111786360
NCBI-ProteinID:
XP_023522428
LinkDB
All DBs
Position
Unknown
AA seq
987 aa
AA seq
DB search
MEDKRRDAGNLPANSTDSPSSEAPSSRRRAGAQKRKASTLGGSISSSAPSKRVTREKSAL
SHPPNHNGPFTRARFGPNNVAGAASANGGLASAAGSVKTEGSLLHSEVQRGDALVAAAEE
LNKATRLANLEASFEADFEAIKSRSANSHVVPNHCGWFSWTKVHPIEERSMPSFFGGKSG
TRNPDIYIEIRNWIMKKFHANPSTQIESKDVSEMEIGELDARQEVMEFLDHWGLINFHPF
LSADSTSTSDVDDENQKDSSVEKLFHFETLESSPSVVPKTNVTTAPPRLLRESAISEEMV
RPEGPSVEYHCNSCSGDCSRKRYHCQKQADFDLCSECFNNGKFDSDMSSSDFILMESAEV
PGASGGKWTDQETLLLLEALELYKENWNEIAEHVATKTKAQCILHFIQMPIEDSFLESEN
NDEVSAKETVVPPSIENDSSVPMDITESMDNKTTGKEASNVENATKEDTVEVKVGQDNSK
SKDVEVKAALDNSKSEDGGQKASEDIALNALREAFEAIGYVLTSDQHPLSFSDVGNPVMA
LAAFLARLVGPDVASASAHFSLKSMSQKSPSLDLATRHCFILEDPLDDKAQANPERVVNV
EAQQNVNEQCEKQRKDTSTSVLDDRALSTTNSSYKNGESVTEETTMENRNSADATKEHDP
MVNHGSDGTNKLKELTEPEVPKDDRTGVVKETENMESKLTTNTVEKLGEETSVEKPSQST
LLSKDIHMSDLQYAEKTEIQKPVPSPSVNTSKIDDVPNPLPSVNELQPLVAANSVKVASS
DAAMVSDPRDKNEPAQTETSKSVVDQGASKVSDSLPTEENATPQPVKPNPVIDKGTDDNQ
SKNNEEENSKCTSKNEEKIDKLKRAAVTTLAAAAVKAKVLANQEEDQIRQLAMILIEKQL
HKLESKLAYFNDMDNVSMRIREQLDRSKQRLFQERAQIIAARLGVPASASRGVAPPGNRM
AMNFPNSVPRPPMGMAPQRPPTSGPRV
NT seq
2964 nt
NT seq
+upstream
nt +downstream
nt
atggaggacaagcgccgcgacgccggaaatttaccggcgaacagcaccgattctccgtca
tcggaggcgccttcttctcgtcgtcgagctggagctcagaagcgaaaggcaagtactctc
ggtggctctatctcctcatccgcgccctcgaaacgcgttactcgcgaaaaatctgcgctt
tcacatcctccaaatcataacggccctttcaccagagctcgatttggccctaacaatgtt
gctggagcagcatcggctaatggaggtcttgcctccgccgccggatcagttaagacggaa
ggctctttacttcattctgaagttcagcgtggagacgcgttggtcgctgcggcggaggaa
ttgaacaaggcgactagattggcgaatttggaggcgtctttcgaagctgatttcgaagcc
attaaatctcggagtgcgaattctcatgtcgttccgaatcattgcggttggttttcatgg
acaaaagtccacccgattgaggaacgctcgatgccttcttttttcggtggaaagtctggc
actcgaaatcctgatatttatattgagatacgtaattggattatgaaaaaattccatgca
aatcctagtacgcagattgaatcaaaagatgtatcagagatggaaatcggagaactagat
gctagacaggaggtgatggagtttctagaccattggggtttgattaattttcaccctttc
ctatccgcagattcaacttcaacaagtgatgttgatgatgaaaatcaaaaggactcttcg
gttgagaagttgtttcactttgaaacattagaatcctctccatctgttgttccaaagact
aatgttaccaccgctccaccaagattgcttcgagaatctgcaatttctgaagagatggtg
aggcctgagggtccatctgttgagtaccactgtaactcgtgctctggtgattgctctcgg
aaacggtaccactgccagaagcaggcagattttgatttatgttcggagtgctttaacaat
gggaaatttgattctgatatgtcttcatcagattttattctcatggagtctgctgaggtt
cctggtgctagtggaggtaagtggacagatcaggaaactctcctcctccttgaggcttta
gagctttataaggaaaactggaatgagattgcggaacatgtggccaccaaaacaaaagcc
caatgtatattgcacttcattcaaatgccaattgaagatagctttcttgaatctgagaac
aacgatgaagtcagtgctaaagaaactgttgttccgccgtcaattgaaaatgattcgtca
gttcccatggatatcactgaatcgatggataataaaactactggaaaagaggcctcgaat
gtagaaaatgccaccaaggaagatacagttgaggtaaaagttgggcaggataattcaaaa
tcaaaggatgttgaagtaaaagctgctttagacaactcgaaatcagaagatggtggtcag
aaggcttctgaagacattgccttgaatgctttgagggaggcatttgaagccattggttat
gtattaacatctgatcagcacccactttcattttctgatgtagggaaccctgtcatggca
ctggctgcattccttgcacgcttagttggacctgatgttgccagtgcatcagctcatttt
tctttgaaaagcatgtctcagaaatctcccagtttagatctggctacaagacactgcttt
attttagaagatccactagatgacaaggcacaagctaatccagagagggttgtcaatgtg
gaagctcagcaaaatgtcaatgaacagtgtgaaaaacagaggaaagacacttctacttca
gttttagatgatagagccttatcaactactaacagtagttacaaaaatggagaatctgtg
acagaggaaactacaatggagaatagaaattctgcagatgctactaaagaacacgatcca
atggttaatcatggttcagatggaacaaataaattgaaagaactgacagaaccagaagtg
cccaaggatgatagaacaggcgttgttaaggaaactgaaaatatggaatcaaaattgaca
acaaatacagttgaaaaattgggagaagaaacttctgttgaaaagccatcacaatctacg
ttgttatcaaaggatatacatatgtcagatctacagtatgctgaaaaaactgagattcag
aaacctgttccatctccttctgtcaatacttcaaaaatagatgatgtgccaaatccttta
ccttccgtgaatgaacttcagccattggttgctgccaattcagtgaaagtagcctcaagt
gatgcagctatggtgtctgatcctcgagataagaatgaacctgcacaaactgaaacatct
aaatctgtggttgaccagggagcaagcaaggtctctgattctttgcccacagaagagaat
gcaactccacagccagttaaaccaaatccagttattgataaaggaacagatgataatcaa
agcaagaacaatgaagaagaaaattccaaatgtacaagtaagaacgaggaaaaaatcgat
aagctgaagcgtgctgcagttacgacgcttgcagcagcagctgtgaaggcaaaagttctg
gctaatcaggaagaggatcaaattcgtcaacttgccatgatattaatcgagaaacagctg
cataagttggaaagcaagttagcatacttcaacgatatggacaatgtatccatgagaatc
agggagcaactggacaggtcaaagcaaaggcttttccaggaacgtgcgcagataattgct
gctcgactcggcgtacctgcttcagcatcacgaggtgtggcaccaccaggaaacagaatg
gctatgaacttcccaaactcagttccaaggcctccaatgggcatggcgccccaaaggcca
ccgacttctggaccacgggtatag
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integrated database retrieval system
