Cucurbita pepo subsp. pepo (vegetable marrow): 111787442
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Entry
111787442 CDS
T05351
Name
(RefSeq) protein CHROMATIN REMODELING 25-like isoform X1
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
111787442
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cpep03400
]
111787442
DNA repair and recombination proteins [BR:
cpep03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
111787442
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
DEAD
HDA2-3
SLFN-g3_helicase
SWI2_SNF2
Motif
Other DBs
NCBI-GeneID:
111787442
NCBI-ProteinID:
XP_023523175
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Position
LG01:2546879..2557590
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AA seq
932 aa
AA seq
DB search
MEDEDEIVPASDISDSGDDYTDINDEGSEDGNEDGEEEEEQSSSLSPSSDEDLKSKNVDA
LLRGNLVVRRQSLLPRVLSVAEGAAVCRKPFKPPCSSGYDERNNQLAHRLWARKRFVPWG
SSRPVSPVISYNLFVPKIAEKDVVEENVTLPPGIDPLVLWQPEDSELDVTNLTSIIVDPV
LVRFLRPHQREGVQFMFECVSGLHKGTDIFGCILADDMGLGKTLQSITLLYTLLCQGFDG
KPMVKKAIIVTPTSLVSNWEAEIKKWVGERVHLIALCESSREDVVTSIDNFVHPKSTSQV
LIISYEKFRMHSSKFSQSESCDLIICDEAHRLKNDQTLTNRALASLLCRRRILLSGTPMQ
NDLEEFFAMVNFTNPGILGDVTYFRRYYEAPIICGREPTATEEEKMLGAQRSTELSEKVN
QFILRRTNALLSNHLPPKIVEVICCKLTPLQADLYNHFVQSKNVKRAITEELKQSKILAY
ITALKKLCNHPKLIYDTIKSGSPGTSGLESCIRFFPPEMFSGRSGAWTGGDGSWVELSGK
MHVLARLLAHLRQRTDDRIVLVSNYTQTLDLFAQLCRERKYPYLRLDGSTSISKRQKLVN
RFNDLSKDEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVF
IYRFLSTGTIEEKVYQRQMSKEGLQKVIQQELTDNLTAQANFLSSEDLRDLFSFHGDVRS
EIHEKMNCTRCQNCNGRPEEMDEGPSTSRTCQSDQVTSDIGGFAQLAGCLDKLKKSEQQV
GSPLEEDLANWGHHFNSTTVPDTILQASAGDEVTFVFSNQIDGKLVPVESKTSPRMKEAE
GNEKNSKLNQNSKQKLLLVSQHRKPLQSITSNEDLNKGTLTFTSNVFQRETMKPVRTSLE
GSMHVTLNLKHSLGNYLPQKRMSDAVEYDDFE
NT seq
2799 nt
NT seq
+upstream
nt +downstream
nt
atggaagacgaagatgagattgtcccagcctctgatattagcgattcaggcgacgactac
accgacattaatgatgaagggtctgaagacgggaacgaggacggcgaagaggaagaggag
caatcttccagcctttctccttcatccgatgaggatctaaaatcgaaaaacgtcgatgct
ctcttgagaggtaacctggtcgtgagaagacaatcgctactcccaagagttctctcagtg
gcagaaggcgcagcagtctgtagaaaaccttttaagcctccatgctcaagtggatatgat
gaaagaaacaaccagcttgcacatcgactgtgggcacgaaaacgatttgtcccttggggc
tcgtcaagaccagtgtcacctgtaatttcttataacttatttgtcccaaaaattgctgag
aaagatgtagtggaggagaatgtgactctaccacctgggatcgatcctttggtcttgtgg
caacctgaagactctgagctcgatgtcactaatttaacatcaatcatagtagatccagtg
ctagttcgtttcctccgccctcatcagagagaaggtgtgcagttcatgtttgaatgtgtt
tcagggctacataaggggacagacatatttgggtgcattctggcagatgatatgggtttg
ggaaagacattgcagtcgatcaccttactttatacccttctttgtcaagggttcgatgga
aagccaatggttaaaaaggctatcattgttacacctaccagtcttgtgagtaattgggag
gctgaaattaagaagtgggttggagaaagggttcaccttattgctctctgtgaaagttcc
agagaggatgttgtcactagcatcgacaactttgtacatcccaagagtacttcacaggtg
ctgattatttcatatgagaaatttcgtatgcattcatcgaagttcagccaaagtgaatca
tgtgatttaatcatatgtgatgaagctcaccgattgaagaatgatcaaacattgacaaat
cgggcactggcttctttgttgtgcaggcgtaggattttgttatcaggaactccaatgcag
aatgatctagaagagttctttgccatggttaactttaccaacccaggaattttgggtgat
gttacatatttccgtcgatattatgaggcaccaattatttgtggaagagaacctaccgct
acagaggaagagaaaatgctgggtgctcaacgctctaccgaactaagtgaaaaagttaat
cagtttatactacggaggaccaatgcacttttatcaaatcacttgccaccaaagattgtt
gaagtcatttgctgcaagttgactcctctccaagcagacctatataaccattttgtacag
tcaaaaaatgttaagcgagcaattaccgaagaactaaagcaatctaagattttggcctat
ataactgcacttaagaaactttgtaatcatccaaagcttatatacgatactataaaaagt
gggagtcccggaacttcgggattagagagttgtattcgttttttccctccagagatgttc
tctggaagatcgggtgcatggactggtggagatgggtcttgggttgagttgtcagggaaa
atgcacgttctagctaggttactagcccatttacgccagagaactgatgaccgcattgtc
cttgtctcaaactacactcaaacgctggatttgtttgctcaactatgtcgtgaaaggaaa
tacccatatttaaggcttgatggaagcacatcaatcagtaaaagacagaagttagtcaac
cgttttaatgacctgtcaaaggatgagtttgtttttcttttgagcagtaaggctggtgga
tgtggtctaaatttgattggtggaaatcggttagttttgtttgaccccgactggaaccct
gcaaatgataagcaagctgctgcaagagtctggagggatgggcaaaagaagagagtattc
atctacagatttttaagcaccggaacaattgaagaaaaggtgtatcagaggcaaatgtca
aaagaagggttgcaaaaagttattcagcaggagttaacagataatcttaccgcgcaggca
aacttcctttcgtctgaagatctacgtgatctattctcattccatggtgacgtcaggtct
gaaatccatgaaaaaatgaattgcactcggtgccaaaattgtaatggtaggcccgaggag
atggacgaaggcccgtccacgagcagaacttgtcagtctgaccaagtaacttctgacatt
ggcggatttgcacaacttgctggatgcttggacaagctgaagaaatcagagcaacaggtg
gggtctcctctagaagaagatttagccaactgggggcaccattttaactctactaccgtg
ccagataccattttgcaagcttctgctggtgatgaggttacatttgttttctcgaatcaa
atcgatgggaaacttgttcctgtcgaatcgaaaactagcccaaggatgaaggaagcagaa
ggaaatgagaagaactccaaattgaaccaaaactcaaagcagaaactattattagtatct
caacatagaaaacctttacaatccattacttcaaatgaagatcttaacaaaggtacatta
acttttacttccaatgtctttcaaagggaaaccatgaagcctgtcagaacttcacttgaa
ggttcaatgcatgtaacattgaatctcaagcattctcttggaaattatttaccacagaaa
agaatgtctgatgctgttgaatatgatgatttcgagtaa
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