Cucurbita pepo subsp. pepo (vegetable marrow): 111787495
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Entry
111787495 CDS
T05351
Name
(RefSeq) transcription elongation factor SPT4 homolog 2
KO
K15171
transcription elongation factor SPT4
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
111787495
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpep03021
]
111787495
03019 Messenger RNA biogenesis [BR:
cpep03019
]
111787495
Transcription machinery [BR:
cpep03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
111787495
RNA polymerase I system
111787495
Messenger RNA biogenesis [BR:
cpep03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
111787495
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Spt4
Motif
Other DBs
NCBI-GeneID:
111787495
NCBI-ProteinID:
XP_023523239
LinkDB
All DBs
Position
LG02:12275943..12278833
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AA seq
116 aa
AA seq
DB search
MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN
GIISVMDPARSWAARWLRIGRFAPGCYTLAVSEALPEDLQNICEEERVQYAPPKRV
NT seq
351 nt
NT seq
+upstream
nt +downstream
nt
atggcaagcgctcctgctcaaattcctaccagtttcgggcacgagctcagagcttgtctt
cgttgtcgtctcgtcaaaacttacgatcagtttcgtgaatcgggctgtgagaattgtccc
ttcttcaagatggacgaagaccacgagcgtgttgtagagtgcactactcctaattttaat
gggataatttctgtcatggatcctgccagaagttgggctgctagatggctgcgaattgga
agatttgcccctggttgttatactctagcagtctcagaggccctccctgaggatttgcag
aatatatgtgaagaggagcgcgtgcaatatgcaccaccaaaacgtgtttga
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