Cucurbita pepo subsp. pepo (vegetable marrow): 111787521
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Entry
111787521 CDS
T05351
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 24 isoform X1
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111787521
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cpep03041
]
111787521
Enzymes [BR:
cpep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
111787521
Spliceosome [BR:
cpep03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
111787521
Complex B
111787521
Complex C
U2 SnRNP specific factors
111787521
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Motif
Other DBs
NCBI-GeneID:
111787521
NCBI-ProteinID:
XP_023523272
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All DBs
Position
LG02:13010059..13014392
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AA seq
785 aa
AA seq
DB search
MSKRKFGFEGFGINRQTTYNFERSQAPQRLYVPPSSRGHGHDNYEDTDVDNIEYDDNEAE
EASGNGDNVAGAGAGAGGGEEEEIDPLDAFMEGIHEEMRAPPPPKPKEKVDKYRDDEEDD
PMESFLKAKKDVGLTLAADALHAGYDSDEEVYAAAKAVDAAMVEYDSDDNMLIVEKKKIE
SIPALEHSSIDYEPFNKDFYEEKASISGMSEEEVSEYRKNLAIRVSGFDVPRPIKTFEDS
GFSPQLMNAIKKQGYEKPTSIQCQAMPIVLSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQ
PELEKEEGPIGVICAPTRELAHQIYLECKKFSKVHGLRVSAVYGGMSKFDQIKELKAGCE
IVVATPGRLIDMIKMKALTMSKATYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFS
ATMPRKVEKLAREILTDPVRVTVGEVGMANEDITQVVHVLPSDLEKLPWLLEKLPEMIDD
GDVLVFASKKATVDEIESQLLQKGFKVAALHGDKDQASRMETLQKFKSGVYHALIATDVA
ARGLDIKSIKSVVNFDIAKDMDMHVHRIGRTGRAGDRDGKAHTLITQKEARFAGELVNSL
IAAGQNVSMELMDLAMKDGRFRSKRDARKKGGVGGGGGGGGKKGKGRGGSNGRGVRGVDF
GLGIGYNPESSGSNPSTNNVQSRSAAVNSLRTGMMAQFKSSFVAASSAPPSQGSNSGYSM
PANKRPTLAGFVSGGSIGGGANRPPPPPPRANSYVPNAGEFSSQKNSESSGDRSKERRRP
SGWDR
NT seq
2358 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaagaggaagtttggctttgaagggtttggaatcaatcgacaaactacttacaat
tttgagcgctcccaagctccccagaggctttatgtccctccctcgtcgcgtggccatggg
cacgacaattatgaagataccgacgttgataatatagaatatgatgataatgaagcggag
gaagcgagtggaaacggcgacaatgtcgctggcgctggcgctggcgctggcggtggtgaa
gaagaagaaattgaccctttagatgcgttcatggagggaattcacgaagagatgagagca
cccccgccccccaaaccgaaggagaaggtggataagtatagggacgacgaggaggatgat
ccaatggagagctttcttaaggctaagaaggacgtgggactgacgctggctgctgatgcg
cttcatgctggttatgattcggatgaggaggtttatgcggcagctaaggctgtggatgca
gcgatggttgagtacgactctgatgataatatgctgattgttgagaagaaaaaaattgaa
tcaattcctgctctagaacatagttccattgattacgagccgttcaataaggatttctac
gaggagaaagcttcaatatcaggaatgagtgaggaggaagtttctgagtaccggaagaat
ttggctattcgtgtgtcgggttttgacgttcctaggccaattaaaacatttgaagactct
ggattttcccctcaacttatgaatgctataaaaaagcaagggtacgagaaacctacttct
atacagtgccaagctatgccgattgtgctttccgggagagatatcattggaatagcaaaa
acgggttccggtaagactgctgcttttgttcttccaatgattgttcatattatggatcaa
cctgaacttgaaaaagaagagggtcctattggagttatatgtgcccccaccagagaactc
gctcaccaaatataccttgagtgtaaaaaattttcaaaagtacacgggctacgtgtctct
gcagtatatggtgggatgtctaaatttgatcagataaaagaactcaaagctggatgcgag
atagttgttgccactcccggcagactgatagatatgataaaaatgaaagccttgacaatg
tcaaaagccacatacttggtacttgatgaagccgatagaatgtttgaccttggatttgaa
ccccaaattcgctccattgttggtcagattcggccagaccgtcaaaccttactcttttct
gcaacaatgcctcgtaaggttgaaaagttagctcgagaaattctcaccgatcctgtacga
gttacggttggagaggttgggatggctaatgaagatatcacacaggttgttcatgtactt
ccttctgatctggagaagttgccttggcttcttgagaagttacctgaaatgattgatgat
ggggatgtattggtgtttgcttctaaaaaagccacagtggatgagatcgaatctcaactc
ctacagaaaggttttaaggttgcagctcttcatggtgacaaagatcaggcatcacgaatg
gaaactctgcaaaagtttaaatctggtgtttatcatgctcttattgcaactgatgttgct
gcccgtgggcttgacattaagtcaatcaagtccgttgtcaactttgatattgcaaaggac
atggatatgcatgttcatcgtattggtagaacaggtcgtgctggtgacagagatgggaaa
gcacacacccttataactcagaaagaggctcgctttgctggtgaattagtcaatagtttg
attgctgctggccagaatgtttcaatggaactgatggatctggccatgaaggatgggcga
ttcaggtcgaagcgtgatgcgaggaaaaaaggaggcgtaggcggcggcggtggcggtggc
gggaagaagggtaaagggagaggtggcagcaatggccgaggcgtgcgtggagtggatttc
ggtctaggaatcggttataacccagaaagcagtggtagtaatccttcaacaaacaatgtt
caaagtcgatctgcagctgtaaattctctgaggacaggaatgatggcacaatttaagagc
agtttcgtcgctgcttcatcagctcctccaagtcagggttcaaatagcggctatagtatg
ccagcaaacaaacgaccaacattagctggttttgtatcaggtggctcgatcggtgggggt
gcgaaccgccctccacctcctccgccaagagcaaactcatatgttccaaatgccggagaa
ttctcaagccaaaagaactcagaaagttctggcgacaggtccaaggaaaggagaagaccc
tctggttgggacagatga
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