Cucurbita pepo subsp. pepo (vegetable marrow): 111787607
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Entry
111787607 CDS
T05351
Name
(RefSeq) sister chromatid cohesion protein PDS5 homolog A-like isoform X1
KO
K11267
sister chromatid cohesion protein PDS5
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cpep03036
]
111787607
03400 DNA repair and recombination proteins [BR:
cpep03400
]
111787607
Chromosome and associated proteins [BR:
cpep03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Other sister chromatid cohesion factors
111787607
DNA repair and recombination proteins [BR:
cpep03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Shu complex and associated proteins
111787607
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PDS5
HEAT_GCN1_C
DUF6017
HEAT_GCN1
Motif
Other DBs
NCBI-GeneID:
111787607
NCBI-ProteinID:
XP_023523390
LinkDB
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Position
LG02:3212870..3226921
Genome browser
AA seq
1233 aa
AA seq
DB search
MDESSLQLIHDVGTKFSKQSRPTKDYIVKSLRQVVDAFACLEQSYVPDATRESESAKKLE
SSIKPLMKSIVNGLLRNRDKDVRLLLAICVSEMFRVTAPEPPFEDKYLRDVFILLLSSFS
ELGDTTSPLFPRRVKILETVARCKCCVIMLDIGCNDLVLEMFDTFFSALRDYHEPSLVNN
ILSIMTHILSEDASLPLVDVVLHNVVKEEKGEPTAASRLAVSVIEASAETLEPFVCGFLT
SCISERDVAGNELKEFYHELIFRIFQSVPQMLLPVIPNLTLELLTDQVDVRIKAVKIVGR
LLALPKHSVAQKYRGLFMEFLKRFSDKSAEVRIHAIQCAKDCYLANPGSSESLEVLAAVE
ERLLDFDDRVRTRAIIIVCDIARSNIKFVPVTLISQAAERLRDKRISVRKKALQQLLEVY
RDYCDKCSKGQLTMNDDFEQIPCKVLMLCYDKDCKEFRFQCMELVLVEDLFPAHLSLEER
TSHWIHMFSLFNIHHEKALRYILLQKQRLQDELQTYLSLRKKGKENQSEEVEKRIETAFL
KMAACFPDPTKAKESFHKLNQIKADNIFIPLELLLDELTSVEAEATRDKLLRMIGSKHPH
FEILKSLSSKCSYNLFSTEHVRFVLDCILSNRLANKHLEASAGKLLLAIFGIFPALIRGL
EGQLLRLLEESNPIDSKLIEVLAKAGPHLSIELSDVYPFLERLCLEGTRAQSKSAVSAIA
ALAGTSGNFLFSKLCKELVDSLHRGMNLPTILQSLGCIAEYSVSTFDDHDLGITPYIYEK
ILQVDLSDNFNTLDGDSNSCDLKIYGLKTIVKSFLPHQGTPRRNVDEFLKILLGMLNACE
ASVGNIPTDSDQARIRLAAAKSVLRLARRWDSQITPEIFCFAILMAKDSSSLVRRLFIDK
AHKLLKEKAIPTRYACVFAFCISDSLKDLQDDSLKYMAEFIEQYRKIAQIHQNSVGQDGS
LTFVPAYIVVFLIYILAHDSGFPHTDCQDENEYAQFCSPLLFMLQMLVNADVNVAKDTVL
YLHSIFRAIKRVEDAVDIETSPKLHILADIGLSFVTALNYSGVSLSRAPRQILLPLSLYR
VNSRQLSQHALDECFIGRVIKTFQSQFILPTINPCSSISMKACKQVEAISSRVTKINKAV
NQEAIVGRRRKRAVSPTMSSSIEFRESSLLIQQNFPTNREKSAFSSQCETTEASLVEAYA
SIQSQDNVLANRNIDDESSMYVNDQLTNSSKFS
NT seq
3702 nt
NT seq
+upstream
nt +downstream
nt
atggatgagtcttcgctgcaacttatccacgacgtcggaactaaattcagcaaacagtct
cgtccaaccaaggattacatcgtgaaatccctccggcaagttgtagatgcttttgcttgt
ttggaacagtcttacgtcccagatgctacaagggagtcagaatcagctaaaaaattagag
agttctataaagcctctaatgaaatctatagttaatggtcttctacggaatagagataaa
gatgtgagacttctattagctatatgcgttagtgaaatgttccgggtcacggctccagaa
ccacctttcgaagacaaatatctaagggatgtttttatacttcttttgagctctttttcg
gagctaggtgatacaacaagtccacttttccctcggagggttaaaatactagagacagtg
gcacgatgtaaatgctgtgtgataatgcttgacattggatgcaacgacttggtgttggag
atgtttgatacatttttctctgctttaagagactatcacgaacctagtctggttaacaac
attttgtcaataatgacccatattctaagcgaggatgcctctctaccgctagtagatgtg
gttttgcacaatgttgtgaaggaggaaaagggtgaacctacagctgcttctcgccttgca
gtttccgtcattgaagccagtgctgagacgcttgaaccatttgtttgtggattcttaaca
tcttgtatttcagagagagatgtggcgggaaatgaactcaaagaattttaccatgaacta
atttttagaattttccaaagtgtccctcagatgcttcttcctgtgattccaaacttgact
ctagagcttttgacggaccaagttgatgttagaataaaagcggttaaaatcgttggtagg
cttttagctctaccaaaacactctgtagcacaaaagtaccgaggactttttatggagttc
ttgaaaaggtttagtgacaaatctgcagaagttagaattcatgctatccaatgtgctaaa
gattgttatctggccaatcctggtagttcagaatctcttgaagttctggctgcagtcgaa
gaacggttactagacttcgatgatagagtgagaacccgagcaataattattgtttgtgat
attgcccgatcaaatatcaaatttgtccccgtgacactaatatctcaagctgctgaaaga
ctacgagataagaggatatcagttaggaaaaaagcccttcagcaattgttggaagtgtat
cgagactattgtgataaatgttccaaaggtcaattgactatgaacgatgactttgaacag
attccttgtaaagtcttgatgctttgctatgataaagattgtaaggagttcaggttccag
tgcatggaacttgttctcgtggaagatttatttccagctcatctctctcttgaggaaagg
acaagccactggatccatatgttctctcttttcaatatccatcatgaaaaggcccttaga
tatattttgctgcaaaaacagaggttacaagatgagttgcaaacttatttgagtctacga
aaaaagggaaaggagaaccaatcagaagaggtagaaaagcgaattgaaactgcatttctc
aaaatggcagcctgctttccagatcctacaaaagcaaaggagtcctttcataaattaaat
caaattaaagctgataatattttcatcccgttggagcttttacttgatgaattgacaagt
gtggaagctgaggccaccagagacaaattgttgaggatgataggaagtaaacatcctcat
tttgagattttgaaatcactctcctcaaagtgttcgtataatttattcagcactgagcat
gtacgctttgtattagactgcattctgagtaacagacttgcaaataaacatttggaggct
tctgctggcaagcttctactggctattttcggcattttccccgcactcatcagaggcttg
gaaggccaactgctaaggttgttggaagaaagcaacccaatagatagtaagctgatcgaa
gtattggcaaaagcaggccctcacttatcaattgaactcagtgatgtatacccatttctg
gagagattatgcttggagggtactcgtgctcaatcaaagagtgctgtttctgccattgca
gctttagctggtacttctgggaattttttgttctctaaactatgtaaggaacttgttgat
tctctacacaggggaatgaacctccccacaatattgcaatctttaggttgtattgcagaa
tattctgtttcaacctttgatgatcatgatctagggatcacaccttatatatatgaaaaa
atcctccaagtggacctatcagataatttcaatacattagacggggatagcaattcttgc
gatttaaagatttatgggctgaaaacaatcgttaagagttttttgccacatcaaggaact
cctagaagaaatgttgacgagtttctgaaaattttattagggatgctgaacgcgtgtgaa
gcttctgttgggaacatccctactgatagtgatcaagctcgaatcagattagctgctgca
aaatcggttcttcgtcttgccagaagatgggattcacaaattacaccggagattttctgt
tttgcaatcttgatggcaaaggactcctcttctttggttagaaggctatttattgacaaa
gcacacaagttactaaaggagaaggctatacctactcgatatgcttgtgtttttgcattt
tgcatctcagatagcttgaaggatctccaggatgattcactcaaatatatggcagaattt
attgagcaatataggaagatagctcagattcatcaaaattctgtgggtcaagatggatca
ctgacctttgttccagcgtatatagtagtattcttgatatatattctagctcatgattca
ggcttcccacatacagactgtcaagatgaaaatgaatatgctcaattttgtagccccctc
ctatttatgttgcagatgttagtcaatgcagatgtaaatgttgcaaaggataccgttttg
tatttgcacagtatttttcgtgccattaagagggttgaggatgctgtggatattgaaaca
tcacctaagttacacattttagcggacattggtctctcttttgtaactgctctaaattat
tccggagtctccctatcacgtgccccaaggcagattttgctgccattatcactatataga
gtaaattccaggcagctttctcaacatgctttggatgaatgttttattggaagagttatt
aagacatttcaatctcagttcattttgcccactatcaacccatgttcctcaataagcatg
aaagcttgtaagcaagttgaagccatttcctctagagtaacgaagatcaataaagctgtg
aatcaggaggctattgttggacggaggcgaaaacgggctgtctctccaacaatgtcctca
tcaattgagtttcgggagagttctctacttattcaacaaaatttcccaacaaacagagaa
aaaagtgcattttcttctcaatgtgaaactacagaagcttctcttgttgaagcatatgcg
tcaattcagagtcaggacaatgtgttggcaaacaggaacattgatgatgagtcttcgatg
tatgtcaacgaccagctcactaattcttccaaattttcttaa
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