KEGG   Cucurbita pepo subsp. pepo (vegetable marrow): 111787843
Entry
111787843         CDS       T05351                                 
Name
(RefSeq) RNA polymerase II subunit A C-terminal domain phosphatase SSU72
  KO
K15544  RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16]
Organism
cpep  Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:cpep00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    111787843
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cpep03021]
    111787843
   03019 Messenger RNA biogenesis [BR:cpep03019]
    111787843
Enzymes [BR:cpep01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.3  Phosphoric-monoester hydrolases
    3.1.3.16  protein-serine/threonine phosphatase
     111787843
Transcription machinery [BR:cpep03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     111787843
Messenger RNA biogenesis [BR:cpep03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     111787843
SSDB
Motif
Pfam: Ssu72
Other DBs
NCBI-GeneID: 111787843
NCBI-ProteinID: XP_023523675
LinkDB
Position
LG02:10066778..10071603
AA seq 193 aa
MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH
MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIE
DLNTRDHVLMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERAESWEDTIDDIVIAFEK
HQRRKLLYSISFY
NT seq 582 nt   +upstreamnt  +downstreamnt
atgaagtatcgttatgcaatggtttgttcatccaaccagaatcgaagcatggaggctcac
tctatcctcaaaagcaagggcttcaacgtttcatcctatggaactggggctcacgtcaag
cttcccggaccttctctccgagaacctaatgtatacgattttggtacaccttacaagcac
atgttcgatgatctccgccgaaaagatcctgaactatacaagcgtaatggcattctgcct
atgcttaagagaaatgcagcagtcaaaacggctcctcaacgttggcaagataatgcagca
gacggtttctttgatgtggtatttacttttgaagaaaaggtctttgatatggttattgaa
gatctcaacacacgtgatcatgtactgatgaaaactgtactgattgtaaacttggaggta
aaagataaccacgaggaggcagctataggagcacggcttacttttgatctttgccaggag
attgaacgggctgaatcatgggaagatacgattgatgatatcgtgattgccttcgagaaa
catcaaagaagaaaactgttgtatagcatttctttttactaa

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