Cucurbita pepo subsp. pepo (vegetable marrow): 111787843
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Entry
111787843 CDS
T05351
Name
(RefSeq) RNA polymerase II subunit A C-terminal domain phosphatase SSU72
KO
K15544
RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:
3.1.3.16
]
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
111787843
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpep03021
]
111787843
03019 Messenger RNA biogenesis [BR:
cpep03019
]
111787843
Enzymes [BR:
cpep01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.3 Phosphoric-monoester hydrolases
3.1.3.16 protein-serine/threonine phosphatase
111787843
Transcription machinery [BR:
cpep03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
111787843
Messenger RNA biogenesis [BR:
cpep03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
111787843
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssu72
Motif
Other DBs
NCBI-GeneID:
111787843
NCBI-ProteinID:
XP_023523675
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All DBs
Position
LG02:10066778..10071603
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AA seq
193 aa
AA seq
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MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH
MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGFFDVVFTFEEKVFDMVIE
DLNTRDHVLMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERAESWEDTIDDIVIAFEK
HQRRKLLYSISFY
NT seq
582 nt
NT seq
+upstream
nt +downstream
nt
atgaagtatcgttatgcaatggtttgttcatccaaccagaatcgaagcatggaggctcac
tctatcctcaaaagcaagggcttcaacgtttcatcctatggaactggggctcacgtcaag
cttcccggaccttctctccgagaacctaatgtatacgattttggtacaccttacaagcac
atgttcgatgatctccgccgaaaagatcctgaactatacaagcgtaatggcattctgcct
atgcttaagagaaatgcagcagtcaaaacggctcctcaacgttggcaagataatgcagca
gacggtttctttgatgtggtatttacttttgaagaaaaggtctttgatatggttattgaa
gatctcaacacacgtgatcatgtactgatgaaaactgtactgattgtaaacttggaggta
aaagataaccacgaggaggcagctataggagcacggcttacttttgatctttgccaggag
attgaacgggctgaatcatgggaagatacgattgatgatatcgtgattgccttcgagaaa
catcaaagaagaaaactgttgtatagcatttctttttactaa
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