Cucurbita pepo subsp. pepo (vegetable marrow): 111787896
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Entry
111787896 CDS
T05351
Name
(RefSeq) replication factor C subunit 4
KO
K10755
replication factor C subunit 2/4
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03030
DNA replication
cpep03410
Base excision repair
cpep03420
Nucleotide excision repair
cpep03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
111787896
03410 Base excision repair
111787896
03420 Nucleotide excision repair
111787896
03430 Mismatch repair
111787896
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cpep03032
]
111787896
03036 Chromosome and associated proteins [BR:
cpep03036
]
111787896
03400 DNA repair and recombination proteins [BR:
cpep03400
]
111787896
DNA replication proteins [BR:
cpep03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
111787896
DNA Replication Termination Factors
ELG1-RFC complex
111787896
Chromosome and associated proteins [BR:
cpep03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
111787896
DNA repair and recombination proteins [BR:
cpep03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
111787896
Check point factors
HRAD17(Rad24)-RFC complex
111787896
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
RCF1-5-like_lid
AAA_22
Rad17
RuvB_N
AAA_16
DUF3802
Mg_chelatase
AAA_5
AAA_11
AAA_assoc_2
AAA_14
SLFN-g3_helicase
AAA_24
nSTAND3
AAA_2
PhoH
ResIII
AAA_19
AAA_30
AAA_18
AAA_28
DUF3853
NPHP3_N
AAA_7
TIP49
AAA_25
RNA_helicase
Ribosomal_L5_C
AAA_17
DUF815
bpMoxR
Parvo_NS1
Motif
Other DBs
NCBI-GeneID:
111787896
NCBI-ProteinID:
XP_023523758
LinkDB
All DBs
Position
LG02:3386405..3390697
Genome browser
AA seq
337 aa
AA seq
DB search
MAPLLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETASCPHMLFYGPPGTGKTTTAL
AIAHELFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIII
LDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEKVMS
KRILHISNEEGLSLDGEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLISVSGII
PREVVDELFAACKSGNFDLANKEVNNVIAEGYPVAQMLSQIFEVVIEAHDLQDEQKAKIC
KKLAEADKCLVDGADEYLQLLDVVSQTMQALSSSMQL
NT seq
1014 nt
NT seq
+upstream
nt +downstream
nt
atggcgccattgttgcagagctctcaaccatgggtggagaaatatcgaccgaagcaagtg
aaagatgtggcgcatcaggatgaagtcgttcgggtcctgaccaacactctcgagactgcc
agttgtcctcatatgctcttttatggaccgccgggtaccggaaaaaccaccaccgccctc
gcgattgctcatgaactattcggtcctgaactttacaagtccagagttttggaattgaat
gcaagtgatgaccgtgggatcaatgttgttcggactaagataaaagattttgctggtgtt
gctgtaagcagtggccaacgccaggggggttatccttgcccaccattcaagataatcatt
ctggatgaggctgattcaatgactgaagatgctcagaatgccctgaggcgtaccatggaa
acacactccaaagtaacacgattcttttttatatgcaactatatcagcaggattatagag
ccccttgcatcaaggtgtgcaaagttcaggtttaagccactctctgaaaaggttatgagc
aagcgtatattgcacattagcaatgaagaaggtctaagtctagatggagaggctctttca
accttaagttcaatctctcaaggtgacctgcgtcgagctatcacatatttacagtcagct
gcacgcttatttggatcatcaatctcttctaaggatctgattagcgtgtctgggattatc
ccacgggaggttgttgatgagctttttgctgcttgtaaaagtgggaacttcgatcttgca
aataaggaagtcaataatgtaattgcagaaggatatcctgtggctcagatgctctcacag
atatttgaggtggttattgaagcccatgatttgcaagatgaacaaaaggccaagatatgc
aagaagttggctgaagcagataagtgtctggttgatggtgcggatgaatatttgcagctg
ctggatgtggttagtcaaacaatgcaagctttgagtagcagtatgcaactgtaa
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integrated database retrieval system
