Cucurbita pepo subsp. pepo (vegetable marrow): 111788103
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Entry
111788103 CDS
T05351
Name
(RefSeq) pre-mRNA-processing protein 40A-like isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111788103
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cpep03041
]
111788103
Spliceosome [BR:
cpep03041
]
Complex A
U1 snRNP components
U1 related factors
111788103
Complex B
111788103
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
Motif
Other DBs
NCBI-GeneID:
111788103
NCBI-ProteinID:
XP_023524057
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All DBs
Position
LG02:complement(1201379..1212356)
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AA seq
937 aa
AA seq
DB search
MDNLSQASGGQFRPNIPAQPGQTFISSSAPQFQSAGQNISSSNVGIPAGQVQPHQYPQSV
PQFVPRPSHRGYITPLSQGIQMPYVPTRSRTSVPPQSQQNVPAPNNQMHGLGSHGLPISS
PYTPMSQMHVPVGVGNSEPLMSSVSQATNSVSQIEQANQHSSVSTVNLAANVPVFNHPSD
WQGHASADGKRYYYNKKTKQSSWEKPLELMTPLERADASTVWKEFTSPDGRKYYYNKVTK
ESKWTMPEELKLAREQAQKESVQGTQTDMAVTTSQPTPTVGLFHAETPAISTISSSISPT
VSGVALSPVPAALFVSGPPAVVHANASSMTAFESLASQDVKNPVDETSTEDIEEARKRMA
VAGKVNETVLEEKYADDEPLVFANKLEAKSAFKALLESVNVQSDWTWEQAMREIINDKRY
GALKTLGERKQAFHEYLGHRKKLDAEERRIRQKKAREEFIKMLDESKELTSSTRWSKAVS
MFENDERFKAVERSRDREDLFETCIVELERKEKERAAEEHKKNITEYREFLESCDYIKVS
SKWRKVQDRLEVDERCLYLEKLDRLLIFQDYMRELEKEEEEQKKIQKGRLRRIERKNRDE
FRQLMEEHITAGVLTAKTFWRDYCLKVKELPQYQAVASNISGSTPKDLFEDVLKELKTKY
HKEKAQIKDVMKAAKVTITSSWTFDDLKAVIEEGAPLALSDINFKLVYQDLLERAKAKEQ
KEAKRRQRLADDFSRLLQLFKEISASSNWEDSKQLFEESEDYRSIGEETFAKEVFEEYVV
HLQEKAKEKERKGEEEKAKKEKECEEKEKERKEKEREREKEKGRVKKDETDSENIDANKT
RVYREKKREKNKDRKRRKRHHSATDDGGSNKDEREESKKSCKRGSDRKKSRKHAYSPELD
SESRHRRHKREHRDGSCRNDGHDELEEGELGEDGEIQ
NT seq
2814 nt
NT seq
+upstream
nt +downstream
nt
atggataatctatctcaggcctcaggcggacagtttcgacctaatatcccagcacaacca
ggccagacattcatttcctcatctgccccacagttccagtcagcagggcagaatatatct
tcttcaaatgttggaattccagctggtcaagtccagccacatcagtatcctcaatcagtg
ccacagtttgtgccaaggccaagccatcgaggctatatcactcctttgtcccagggtatt
caaatgccttatgttccgacaaggtctcgtacttctgttccacctcagagtcagcaaaac
gtgcctgcaccaaataatcaaatgcatggtctgggttctcatggactacctatttcttca
ccatatactccaatgtcacaaatgcatgtacctgttggagttggtaatagcgaacctttg
atgtcttctgtaagccaggctacaaactcagtctcacagattgagcaagctaaccagcat
tcttcagtttctaccgtaaacctagctgctaatgttcctgtcttcaatcatccatctgat
tggcaagggcatgcatcagctgatggaaaaaggtactattacaacaaaaaaaccaaacag
tccagttgggaaaagccattggaacttatgacaccacttgagagagctgatgcatcaact
gtgtggaaggaatttacgtctccagatggaagaaagtactattacaataaggtgacaaaa
gaatcaaagtggaccatgccagaagaactgaagttggctcgcgagcaggctcaaaaagaa
tctgtccaaggaacacaaacagatatggctgttacaacgtctcaacctacacctactgtt
ggtcttttccatgctgaaacgccggcaatttctaccattagctccagcatttctccaact
gtttctggggttgcattgagtccagttccagctgctctttttgtttctggtcctcctgct
gtggtccatgccaatgcttcgtcaatgactgcttttgaaagccttgcatctcaagatgta
aaaaatcctgttgatgaaacttctacggaggacattgaggaagcaaggaagagaatggca
gttgcaggaaaagttaatgagactgtcttagaggaaaaatatgctgacgatgaaccattg
gtattcgccaacaagctggaggcaaagagtgcatttaaagcgcttctggaatctgtaaat
gttcagtctgattggacgtgggagcaggctatgcgagaaataattaatgacaaaagatat
ggcgccttgaaaactcttggtgagcggaagcaagctttccatgagtatttaggacataga
aaaaagttggatgcagaagaaagacgcataagacagaaaaaagctcgtgaggaattcatc
aagatgttggatgagtccaaggaactcacatcatctaccagatggagcaaagccgttagt
atgtttgagaatgatgaacggttcaaagccgttgaacgttctagagatcgggaggatctt
tttgaaacctgcatagtggaacttgagaggaaggaaaaagaaagggctgcagaggagcac
aagaaaaatattactgaatatagggaatttcttgagtcttgtgattacataaaggtgagt
agcaaatggcggaaagtacaagatcgattggaagttgatgagagatgcttataccttgag
aaacttgatcgcttgcttattttccaggactatatgcgtgagttggaaaaggaggaagag
gaacagaagaagatacaaaagggacgtttgcgaagaattgaaagaaaaaaccgcgatgag
ttccgccaactcatggaagaacacattaccgctggtgttcttacagctaagactttttgg
cgtgattactgtttgaaggttaaggagttgcctcagtatcaagctgttgcttcaaatata
tctggctcaacaccaaaggacttgtttgaggatgttctgaaggaattaaaaactaagtat
cacaaagaaaaggctcagataaaagatgtgatgaaggcagcgaaggttaccatcacttca
tcatggacatttgatgaccttaaggctgtcattgaagagggtgctcctcttgcactttca
gatataaattttaagcttgtatatcaggatttactagaaagagccaaagcaaaggagcag
aaagaagccaaaaggcgtcaacgtttggctgatgacttctcaagactgcttcagttattc
aaggagatttcagcttcttccaactgggaggatagcaaacagctttttgaagagagtgaa
gactacagatcaattggggaagagaccttcgcgaaggaagtttttgaggaatacgtagtg
catttacaagaaaaggcaaaagaaaaggaacgcaagggtgaggaggagaaggctaaaaag
gaaaaagaatgcgaggaaaaggagaaagagcgaaaggagaaggaaagagaacgtgaaaaa
gaaaagggacgtgttaagaaggatgaaactgatagcgaaaatatagatgcaaacaaaact
cgtgtctacagagaaaagaaaagggaaaaaaacaaagacaggaaacgtcggaagcggcat
catagtgccactgatgatggtggttctaataaagatgagagagaggagtctaagaagtct
tgcaaacgtggcagtgaccgaaaaaagtcaaggaagcacgcatattcacctgaattagac
agtgagagtaggcacagaagacacaagagagaacatcgagatggttcatgtagaaatgac
ggacatgatgaacttgaagagggggagcttggagaggatggggaaattcaatag
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