Cucurbita pepo subsp. pepo (vegetable marrow): 111788389
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Entry
111788389 CDS
T05351
Name
(RefSeq) THO complex subunit 5B
KO
K13174
THO complex subunit 5
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
111788389
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpep03019
]
111788389
03041 Spliceosome [BR:
cpep03041
]
111788389
Messenger RNA biogenesis [BR:
cpep03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
111788389
Spliceosome [BR:
cpep03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
111788389
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FmiP_Thoc5
Cortex-I_coil
DUF7260
Motif
Other DBs
NCBI-GeneID:
111788389
NCBI-ProteinID:
XP_023524487
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Position
LG02:complement(938199..942417)
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AA seq
818 aa
AA seq
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MDEEIEEGMLIEDETEPPPQESETGKISPYEMLRESKSSVEEIVTKMLSIKKHGEPKTQL
RELVTQMFLHFVTLRQANRSILLEEDRVKAETERAKAPVDFTTLQLNNLMYEKSHYVKAI
KACKDFKSKYPDIELVSEDEFFRDAQEDIKNSIRSKDSAHNLMLQRLDYELFQRKELCKR
RDELEQHKKSLQEVIANRKKFLSSLPSHLKSLKKASLPVQNQLGMLQTKKLKQHQLAELL
PPPLYVIYSQFLAQKEAFGENIELEIVGSVKDAQAFARHQANKDAGASTNVESFKLEDDA
PDEDDDGQRRRKRPKKIPAKVNIEHAGIYQVHPLKIILHIYDNETCEPKSMKLLSLKFEC
LSKLNIICVGIEGSHEGPENNILCNLFPDDTGLELPHQSAKLVVRETLSFSDKRTSRPYK
WAQHLAGIDFLPEFPPLVSAQESASGETVRSDIVSGLSMYRQQNRIQTVVQRLRSRKKAQ
LALVEQLDSLEKLKWPVLTCDNVPWASHKPSCSLQGWSLVGYAKSQESSLTIMEKEKVRD
PLDVDMLGKSGISREDIDGAREDGELPALVSSTSILDNAQPTPLRTPNLEHSKQLTLISK
SITPQTNYSRMLSFSKHDEDYELMLDVDSDQDEPMQTELAADDVASIPSNDITRKTWMDY
GSKEYCLVMTRNTDSPAKNLKLQAKIKISMEYPLRPPFFTLNLYTINSEENRDESDDSDW
YNELRAMEAEVNLHILKMLPLDQENYILSHQICCLEMLFNYCISEASRSSERKKSSFVID
VGLCKPVSGSIHARSFRGRDRRKMISWKDIECAPGYPC
NT seq
2457 nt
NT seq
+upstream
nt +downstream
nt
atggacgaggagatagaggagggaatgctcatagaagacgagaccgagcccccgccgcag
gagagcgaaacgggtaaaatatcgccttacgaaatgctgcgagagagcaagagttctgtg
gaggagatcgtaaccaagatgctctccatcaagaagcatggcgagccaaaaactcagctc
agagaactcgtaacgcagatgttccttcacttcgtaacccttcgccaggcgaaccgctct
attttgctggaagaggaccgggtgaaagctgaaacagagcgagcaaaagctccagtagac
ttcaccacgctgcaacttaacaacttgatgtatgaaaagagtcactatgttaaagcaata
aaggcctgtaaagacttcaaatcaaagtatcctgatatcgaactcgtgtctgaggatgag
tttttccgggatgcacaggaggatattaagaactccataaggtcaaaagacagcgcgcac
aatctgatgctgcagaggcttgactatgagcttttccagcgcaaagaactttgcaaacgg
cgagatgaacttgaacaacataagaaaagccttcaagaagtcattgctaatagaaagaaa
ttcttatcaagtcttccctcacacctcaagtccttgaaaaaggcatccttgcccgtacag
aatcagttggggatgttgcagacaaagaaattaaagcaacaccagctagcagagttactt
ccacctcctctttatgtaatctactcacagttcttggcacaaaaggaagcatttggtgaa
aatattgaattggagatagtaggaagtgtcaaagatgcccaagcttttgcacgccatcaa
gcgaataaggatgctggtgcatcaaccaatgttgagagcttcaagttggaggatgatgcc
cctgatgaagatgacgatggccaaaggaggagaaaacggccaaagaagattccagcaaag
gtgaacattgagcatgcagggatatatcaagttcatccactaaagataatccttcacatt
tatgacaatgaaacttgcgaacccaagtcaatgaaattgctttctctgaagtttgaatgc
ttgtcaaagttgaacattatttgtgttgggattgaaggatctcatgaaggacctgagaat
aacatcttatgcaacttgttcccggatgacactggccttgagctgcctcatcagtcagcc
aaacttgttgttcgtgaaactctttcatttagtgataagagaacctctcgaccttataag
tgggcccaacatttggctggaattgattttttgccagaatttccgccattggtgagtgca
caagaatctgccagtggtgaaactgttagaagtgatattgtatcaggcctctcaatgtat
cgtcagcaaaaccgcatacagacagttgtgcaaagattgcgctctcgtaaaaaggctcag
ctggctcttgtggaacagcttgattcgcttgaaaaactcaaatggccagttctgacatgt
gataatgtcccatgggcttcacataaaccttcatgctctttgcaaggttggtcactcgta
ggctatgctaaaagtcaggaatcatctttgactataatggagaaagagaaagttcgggat
cctttagatgttgatatgcttggaaaatctggcatttcaagagaagatattgacggtgct
agggaagatggggaacttcctgctctagtttcatctacatctatcttagataatgctcaa
cctactcccttaagaacacccaatcttgagcattctaaacagctaactctaatttccaaa
agcattacacctcaaaccaattactctaggatgctaagtttcagtaaacatgatgaagat
tatgagttgatgctagatgttgatagcgaccaggatgagccaatgcagactgagcttgca
gcagatgacgtagcttctattccttccaacgacataacaagaaagacatggatggattat
gggtccaaggaatattgccttgtcatgaccaggaacactgattcaccagccaaaaatctt
aagttgcaagccaagattaaaatcagcatggagtatcctcttaggcctcctttctttact
ttgaatctttacacgatcaattctgaagaaaaccgtgatgagagtgatgactctgattgg
tataatgaacttcgggccatggaagctgaggtgaatctccatatacttaagatgctgcct
ttggatcaggagaactatatattgtctcatcaaatttgttgtcttgaaatgttgttcaac
tactgcatcagtgaggcatcccgatcctctgaaaggaaaaagagtagttttgtgattgat
gttggattatgcaaacctgttagtggtagtatacatgctaggtcatttaggggaagggat
cgtaggaagatgatatcctggaaagacattgaatgcgctcccggctatccttgttaa
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