Cucurbita pepo subsp. pepo (vegetable marrow): 111788540
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Entry
111788540 CDS
T05351
Name
(RefSeq) probable rhamnogalacturonate lyase B isoform X1
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
111788540
Enzymes [BR:
cpep01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
111788540
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GFIT
Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
CarboxypepD_reg
Motif
Other DBs
NCBI-GeneID:
111788540
NCBI-ProteinID:
XP_023524656
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Position
LG02:complement(2779026..2783488)
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AA seq
634 aa
AA seq
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MSSRGVRLQIRDHHVVVDNGILQLTLSKPDGIITGIRYNGVDNLLEVLNPESNRGYWDIV
WNSPGSQGIFDVIKGSSFRVIVENEEQVELSFTRIWDPSLEGKVVPLNIDKRFIVLRGSS
GFYSYAIYEHLKDWPDFDIGETRITFKLRKDKFQYMAVADNRQRLMPLPDDRLSGRCQTL
GFPEAVLLTHPKNPEHKDEVDDKYQYSCENKDLKVHGWISTNPPIGFWQITPSDEFRSGG
PHKQSLTSHVGPTTLAIFLSTHYAGQDLVPKFRNGEPWKKVFGPVFLYLNSTKAGDDPFW
LWEDAKIQMMTEVQSWPYSFPASDDFPKLDQRGTISGRLLVFDRYMNRDYLPAGGAFVGL
SAPGEVGSWQRECKGYQFWTRADDRGYFIINHVHIGQYNLYAWVPGFIGDYRCDALINIS
QGSSIELGDLVYEPPRDGPTLWEIGIPDRSASEFYVPDPNPLHINKLFVNHPERFRQYGL
WERYAELYPDEDLVYTVGTSDYRKDWFFAQVPRKTNNNSHQGTTWKIAFKLDQVDRKSRY
MLRVAIASATLAELQIRVNDLSSKRPLFTSGLIGRDNSIARHGIHGIYWLYSVGIAGLHL
VEGDNAIFFTQPRCTSPFQGIMYDYIRLEAPSTN
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcccgaggagtgcgattgcagatacgagatcatcatgtagtagtagacaatgga
atactgcaactaactttatcaaaaccagatggaattatcactggcatacgttataatggt
gttgacaatctgcttgaagttctcaaccctgaatctaacagagggtattgggatattgtt
tggaattctccaggaagccaggggatatttgacgtgattaagggatcaagttttagggtt
atagtggaaaatgaggaacaggttgagctttcttttacaaggatatgggatccgtccctc
gagggcaaggttgttcctctgaatatcgacaagaggttcatagttctacgtggttcctct
ggattctactcttatgctatttatgagcacttgaaggattggcctgattttgatattggt
gaaactaggatcacttttaaactcagaaaagataagtttcagtacatggctgtagctgac
aacaggcagagattgatgcccctgcccgatgatcggttatctggaagatgccagactttg
ggcttccctgaagctgtcttgcttacccatcccaagaaccccgaacacaaggatgaggtg
gatgacaaataccaatactcatgtgaaaacaaagacttaaaggtccatggatggataagc
accaacccgcccatcgggttctggcaaattacaccgagtgatgaatttcgatcaggcggg
ccacataagcagagtttaacatcccatgtgggacctacaactcttgctatatttcttagt
actcattatgcgggacaagatttggtgccaaaatttagaaatggcgagccatggaagaaa
gtttttgggcctgtttttctttatcttaactccactaaagctggagatgatcccttttgg
ttatgggaggatgctaaaatacagatgatgacagaagtccaaagttggccatacagtttc
cccgcctccgacgatttcccgaaactggatcaacggggtaccattagcggtaggcttctg
gttttcgacaggtatatgaaccgagactatcttccagccggtggagcgttcgtcggattg
tctgcaccaggagaagtagggtcatggcagagagaatgcaagggatatcaattctggact
agagcggatgatcgtggctattttatcatcaatcacgttcacattggccaatataatcta
tatgcatgggtccctggcttcattggtgattaccgttgcgatgccttaatcaacataagc
caaggatctagcattgaacttggcgatcttgtttacgaacctccaagagatggaccgaca
ctatgggagataggcattcccgatcgctccgcgtcggagttctacgttcctgatcctaat
ccattgcatattaataagctctttgtaaatcatcctgaaaggtttcgacagtacgggttg
tgggagaggtacgctgaattatacccggacgaggatttagtatacactgttggcacaagt
gattatagaaaagattggttctttgctcaggtcccaaggaagacgaacaataattcacat
caaggaactacctggaaaatcgcattcaaactcgatcaagtagatcgcaagagtaggtat
atgctacgagttgcaatcgcatctgcaactcttgctgaattgcagattcgggttaatgat
ctgagttcaaaacgacctttgtttacgagcgggttgatagggagagacaactcaattgca
agacatggaattcatggaatttattggctttacagcgtgggcatagcaggcttacacctt
gttgaaggagataacgcaatcttctttactcagccacgctgcaccagccctttccaaggt
atcatgtatgattatatccgtctggaagctccttcaacaaactga
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