Cucurbita pepo subsp. pepo (vegetable marrow): 111788895
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Entry
111788895 CDS
T05351
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4-like protein
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111788895
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cpep03041
]
111788895
Spliceosome [BR:
cpep03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
111788895
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
Beta-prop_THOC3
WD40_Prp19
WD40
Beta-prop_WDR3_1st
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
WD40_Gbeta
WD40_CDC20-Fz
EIF3I
Beta-prop_EML_2
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR36-Utp21_2nd
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
Beta-prop_EML
Beta-prop_WDR36-Utp21_1st
NBCH_WD40
Beta-prop_DCAF4
Beta-prop_TEP1_C
ANAPC4_WD40
PRP4
Beta-prop_Aladin
WDR90_beta-prop_4th
Beta-prop_EIPR1
Beta-prop_WDR19_1st
WD40_RFWD3
Beta-prop_IFT122_1st
Beta-prop_RIG_2nd
Beta-prop_Vps41
Beta-prop_SCAP
Beta-prop_WDR41
WD40_like
Beta-prop_Nup120_160
Motif
Other DBs
NCBI-GeneID:
111788895
NCBI-ProteinID:
XP_023525233
LinkDB
All DBs
Position
LG02:complement(6132215..6137051)
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AA seq
570 aa
AA seq
DB search
MDVDDQNPASTAAESPEILPGGENEDLDNPAEPMQPAATTVIPSSIVPSIAPIPPPLITR
PLAPLPSRPLLFRPPVAQNGEMRTSDSDSEHDELAPSRATQGSTAEYEVSEESRQVRERQ
EKAMQEFLMKRRASALAVPTNDMAVRARLRRLGEPITLFGEREMERRDRLRSIMARLDAE
GQLEKLLKVHEEEEAAATGGTEEAEEEVLQYPFYTEGPKALLDARIDIAKYSIVRAAARL
ERAKRKRDDPDEDVEAEMDWALRQAESLVLDCSEIGDDRPLSGCSFSSDGKFLATSSLSG
VAKMWSMPQVRKVSNFKGHTERVTDVIFSPVNECLATASADRTARLWSTEGSLLRTFEGH
LDRLARIAFHPSGKYLGTTSFDKTWRLWDIETGVELLLQEGHSRSVYGIDFHHDGSLVSS
CGLDALARVWDLRTGRSVLALEGHVKPVLGVNFSPNGYHLATGGEDNTCRIWDLRKKRSL
YIIPAHSNLISQVKYEPQEGYFLVTASFDMTAKIWSARDFKPVKTLSGHEAKVTSLDIIS
DGQCIATVSHDRTIKLWSVNSKDEQTMDVD
NT seq
1713 nt
NT seq
+upstream
nt +downstream
nt
atggatgttgatgatcaaaaccctgcatcaactgctgcggaatctcctgaaatccttcct
ggtggtgaaaatgaggatcttgataatccagcagaaccaatgcaacctgcagctacaaca
gttattccatcttcaattgtgccttccattgctcccatcccccctcctctaattacacgt
ccattggctcctcttccgagccggcctctcctcttcaggccccctgtagcacaaaatggg
gagatgagaacaagtgactctgactcagaacacgatgaattggctccttcccgtgccact
caaggttcaactgcagaatatgaagtatcagaagagagcagacaggtaagagagcgtcag
gaaaaagccatgcaggaatttctgatgaagcgccgtgcttctgctctagcagtacctact
aatgacatggctgttcgagcccgtcttcgtcgtcttggtgaacccataacactttttgga
gaaagagaaatggaaaggcgggacaggttgcggtcaataatggcacgtttagatgctgaa
gggcagttagagaagctgttgaaagttcatgaggaagaggaggcagcagctactggtgga
actgaggaggctgaggaagaagtgcttcaatatcctttttatactgaggggcccaaggct
ctcttggatgcaagaattgatattgcaaaatattcgatcgtaagagcagctgcacgtctt
gagcgtgctaagaggaaaagggatgatccagatgaagatgtggaagctgaaatggattgg
gctctgagacaggctgaaagtttggttctggactgcagtgagataggagatgatcgacca
ctttctggttgctcgttctcgtctgatggaaaattcctcgccactagttcattaagtgga
gttgcgaaaatgtggagcatgcctcaagtaaggaaggtttccaactttaagggacacaca
gagcgggttactgatgtgatattttctccagtgaacgagtgtttagcaactgcctctgct
gaccgaactgcaaggttgtggtctactgaaggatctctccttagaacatttgagggccat
ctggaccgccttgcacggattgccttccacccatcaggtaagtacttgggcaccactagc
ttcgacaagacgtggagattatgggacattgaaactggtgtagagttgcttcttcaagaa
ggtcatagtagaagtgtttatggcatagacttccaccatgatggatctttagtatcatct
tgtggacttgatgcacttgctcgtgtttgggaccttcgaactggtagaagtgttcttgcc
ttagaaggccacgtcaagccagtccttggagttaatttttcacccaatggttatcattta
gctactggtggtgaagataacacctgtcggatatgggatttaaggaagaaaagatctctt
tatataatacctgcacactcaaaccttatttcacaggtgaaatatgagcctcaagagggt
tacttcttggtaactgcatcatttgatatgactgcaaagatttggtctgctcgtgatttt
aagcctgtgaagacactctctggccacgaagcaaaagttacatctttggatataatttca
gatggacagtgtattgcgactgtctcccacgatcggaccataaagctttggtctgtcaat
agcaaagacgaacaaactatggacgttgattga
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