Cucurbita pepo subsp. pepo (vegetable marrow): 111788896
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Entry
111788896 CDS
T05351
Name
(RefSeq) F-box protein SKP2A-like
KO
K03875
F-box and leucine-rich repeat protein 1 (S-phase kinase-associated protein 2)
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
111788896
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cpep04121
]
111788896
Ubiquitin system [BR:
cpep04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
111788896
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GFIT
Motif
Pfam:
DUF7885
LRR_6
LRR_4
F-box-like
LRR_At5g56370
F-box
F-box_4
LRR_At1g61320_AtMIF1
Motif
Other DBs
NCBI-GeneID:
111788896
NCBI-ProteinID:
XP_023525237
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Position
LG01:17710873..17715012
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AA seq
338 aa
AA seq
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MDGGVIAGWKDIPMELLLQIISLVDDRTVIVASGVCRGWRDAICFGLLHLSLSWCKKNMN
NLVLSLVPKFAKLQTLILRQDKPQLADDAVDTIASYCRDLQVLDLRKSFKLSDRSLYALA
HGCRDLKKLNISGCTSFSDTALAYLASYCRKLKVLNLCGCVKATSDTALQVIGQYCNHLQ
SVNLGWCENVSDVGVMSLAYGCPDLRSLDLCGCVLITDNSVIALANMCPHLRSLGLYYCQ
NITDRAMYSLAHSIKNKPTKWAPGKCKNDHDGLRTLNISQCTALTPPAVQAVCDSFPALH
TCSGRHSLIMSGCLNLMSVHCACAVQAHRTAAFHHPAH
NT seq
1017 nt
NT seq
+upstream
nt +downstream
nt
atggacggtggggtgatagccggatggaaggacattcctatggagctcctcttgcaaatt
atatctcttgttgatgatcgaactgttattgtggcttcaggcgtgtgtcgtggatggagg
gacgctatttgctttggactcctccatctctctctctcatggtgcaagaagaacatgaac
aacttggtcctatcccttgttcctaaatttgcaaaactgcaaactttaatcttgcgccaa
gataaaccccagcttgcagatgatgctgttgataccattgctagttactgccgcgatctg
caggtcctcgacctgagaaaaagtttcaagctcagtgatcgttccttgtatgctctggct
catggttgccgtgatcttaaaaagcttaatattagtggctgtacttcatttagtgacact
gcattggcttatctagccagttactgcagaaagctaaaagttcttaatctttgtggctgc
gtcaaggctacatcggacactgcattgcaggttatcggacaatactgtaatcatttgcag
tctgtaaatctaggatggtgtgagaatgtgagtgatgtgggtgtgatgagtttggcgtat
ggatgtcctgatctcagaagcttagatttgtgtggctgtgtcctaattacagataatagt
gtgattgctttggcaaatatgtgccctcatctgaggtcccttggcctctactactgtcag
aacataacagacagagctatgtactctttggcccatagcataaagaacaagcctacaaaa
tgggcacctgggaaatgcaagaacgatcacgatggacttcgaacacttaacattagtcaa
tgcacagctcttactccccccgccgtccaggcagtttgtgattcgtttccagctcttcac
acctgctcgggtcgccattctctcatcatgagtggctgtctaaatctaatgtctgtgcat
tgtgcttgtgcagtccaagctcaccgcactgctgcttttcatcatccggctcattga
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