Cucurbita pepo subsp. pepo (vegetable marrow): 111789276
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Entry
111789276 CDS
T05351
Name
(RefSeq) CCR4-NOT transcription complex subunit 9-like
KO
K12606
CCR4-NOT transcription complex subunit 9
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111789276
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpep03019
]
111789276
Messenger RNA biogenesis [BR:
cpep03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
111789276
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GFIT
Motif
Pfam:
Rcd1
Motif
Other DBs
NCBI-GeneID:
111789276
NCBI-ProteinID:
XP_023525760
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Position
LG02:5011347..5018606
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AA seq
323 aa
AA seq
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MSNLPQSLSMSVAFGGPGPGPGPSMPSASGAPPNKERKMASSEQLVLDLSNPDLRENALL
ELSKKRELFQDLAPLLWNSFGTIAALLQEIVSIYPVLSPPNLTPAQSNRVCNALALLQCV
ASHSDTRMLFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEVISFLLS
TEIIPLCLRTMEMGSELSKTVATFIVQKILLDDVGLDYICTTAERFFAVGRVLGNMVAAL
SEQPSSRLLKHIIRCYLRLSDNPKACDALRSCLPDMLRDATFNGCLRDDATTRRWLQQLL
HNVGMSRVPALQAGAGFDHMMVN
NT seq
972 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaatctccctcaatcgctctccatgagtgttgcgtttggaggtcctggtcctggt
cctggtccgtccatgcccagtgcctctggagctccaccgaacaaggagcgtaaaatggct
tcttcggagcagttggtgctcgacctcagcaatccggatctccgggagaacgctctactt
gaactttcgaagaagagggagttgtttcaagatttggccccattgttatggaactctttt
ggaaccattgctgccttattgcaagagattgtatcaatatatcctgttctttcaccccca
aatctaacacctgcgcagtcgaatagagtttgcaatgctcttgctcttcttcagtgtgta
gcctctcactcagatacaaggatgttgtttctcaatgctcacataccgttgtatttgtat
cctttccttaacacaacaagcaagtcaaggccttttgagtacttgcgccttactagcttg
ggtgtcatcggtgcgttggtgaaggtagatgatactgaagtaatcagttttcttctgtca
actgaaataattcctctatgcctgcgtaccatggaaatgggaagcgagttgtcaaaaaca
gttgcaacatttattgtgcagaaaattttgctggatgatgtggggttggattatatttgt
actacagctgagcgattttttgctgttggtcgagttctggggaatatggtagcagctctt
tctgaacagccttcctctcgtctgttgaaacacataatccgatgttatcttcggttgtcc
gataacccaaaagcttgcgatgccttaaggagctgtcttccagacatgttgagagatgct
actttcaatggctgcctccgggatgatgcaaccactaggaggtggctgcaacagttgcta
cacaatgtaggaatgagtagagttccagcacttcaggcaggggctggatttgaccacatg
atggtgaactag
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