Cucurbita pepo subsp. pepo (vegetable marrow): 111789291
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Entry
111789291 CDS
T05351
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111789291
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cpep03041
]
111789291
03009 Ribosome biogenesis [BR:
cpep03009
]
111789291
Enzymes [BR:
cpep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
111789291
Spliceosome [BR:
cpep03041
]
Complex A
U1 snRNP components
U1 related factors
111789291
Complex B
111789291
Ribosome biogenesis [BR:
cpep03009
]
Eukaryotic type
Pre-60S particles
Helicases
111789291
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
111789291
NCBI-ProteinID:
XP_023525778
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All DBs
Position
LG02:complement(14093483..14098376)
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AA seq
505 aa
AA seq
DB search
MSRYDSRTSDPTSYRDRRSDSGFGGSTGYGNSVRSSSSKSDYHASEAPKKVDLDGLPHFE
KNFYIEASSVAEMTEREVEEYRTRREITVEGRDVPKPVKSFRDVGFPDYVMQEIAKAGFT
EPTPIQSQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPILSPGDGPIVLVLAP
TRELAVQIQQEATKFGASSKIKNTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMMESH
HTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSQIRPDRQTLYWSATWPKEVEQLARKFLY
NPYKVIIGSPDLKANHAIRQHVDIVSENQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQI
TRQLRMDGWPALSIHGDKSQAERDWVLSEFRSGKSPIMTATDVAARGLDVKDVKYVINYD
FPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELIAILEEAGQKVSPELAAMGRG
APPPPSGHGGFRDRGRGFGGGRSWS
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgctacgacagccgcacctccgatcccacttcttaccgcgaccgtagaagtgat
tcaggttttggtgggtctacaggctatggcaattcagtgcgatcctcctctagcaagagt
gactatcatgcttctgaggccccaaaaaaggtggatttggatggattacctcattttgag
aagaacttctacattgaggcatcatcagtggcggaaatgacagagagagaggttgaggag
tatcgaacaaggagggaaatcactgtagaaggtcgcgatgttccaaaaccagtcaagtct
ttccgtgatgttggatttcccgattatgtcatgcaagaaattgccaaagctggcttcact
gaacctactcctattcagtcccaaggatggccaatggcacttaaaggtcgagatctcatt
ggtattgcagaaacggggtcagggaaaacacttgcataccttttgcctgcaattgtccat
gtcaatgcccagccaatcctttctcctggagatggtccaattgtgttagttctagctcct
actcgtgaacttgcagttcaaattcaacaagaagctacaaaatttggtgcatcttcgaag
attaagaacacatgcatatatggtggtgttcccaaaggacctcaagtgcgtgatcttcag
aaaggagttgaaattgtaattgctacaccgggaagattgattgatatgatggagtcacat
catacaaacttacgaagggttacttaccttgtactggatgaggctgatcggatgctagat
atgggatttgaccctcaaatacggaaaattgtttcacagattcggcctgatcggcaaact
ttgtactggagtgctacctggcctaaagaagttgaacaattggccaggaagtttctatac
aatccatacaaggtcatcattggttctccagacctgaaagctaatcatgccatacgccaa
catgttgatatcgtctctgaaaatcagaaatataacaaattggtgaaattgctggaggat
ataatggatgggagtcgaatcctgatctttatggataccaagaaaggctgtgatcaaatt
acccgacagcttcgcatggatggttggcctgcactttcaattcatggtgataagagtcaa
gcagaaagggattgggtcctctcagaatttaggtctggcaagagccctataatgacggct
acagatgttgctgctcgtggtttagatgtaaaggacgtaaaatatgtaataaattacgat
tttcctggatctcttgaggattatgtacatcgaattggtcgaacaggaagagctggagca
aaaggaactgcatacactttcttcaccgctgctaatgcaagatttgctaaagaactcata
gcgattcttgaagaagctggacagaaggttagtcctgaactggcagcaatgggtcgtggt
gcgcctcctcctccctcaggtcatggggggttccgagatcgtggaaggggttttggtggt
ggccgatcatggagttga
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