Cucurbita pepo subsp. pepo (vegetable marrow): 111789662
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Entry
111789662 CDS
T05351
Name
(RefSeq) SAC3 family protein B
KO
K23719
nuclear mRNA export protein SAC3
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpep03019
]
111789662
Messenger RNA biogenesis [BR:
cpep03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX-2 complex
111789662
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SAC3_GANP
Motif
Other DBs
NCBI-GeneID:
111789662
NCBI-ProteinID:
XP_023526068
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All DBs
Position
LG03:11317318..11329158
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AA seq
1473 aa
AA seq
DB search
MSYQGFGKASGPSAPPKLQHSFGNSAIPDSVSPLRASSQHEAFGSRVQSHPMAFQTPGTA
SSLHHQYHRPVSPSPIFEEQPKVRGMLPNSQAYQDRALPERSHDHDTNIQAPKRTKSPEK
PFVNNLRSAQTNLLRPSTSPPRPFSWSNTQEAVGSMRNINAESVVTEPTGVLVSKRTKSP
TLSSSDQVSGCNSDPTPDDTERERLAKAKRLARFKVELVEVAHSKLGSVDARDNSNRNEH
STTERDKCMSNQSLESSTNLAQGNSMPDYEALESSSIIIGLCPDMCPESERAERERKGDL
DHYERLDGDRNQTSKLLAVKKYTRTAEREASLIRPMPVLLKTIEYLLELLSQPYDEKFLG
IYNFLWDRMRAIRMDLRMQHLFNENAITMLEQMIRLHIIAMHELCEFSKGEGFAEGFDAH
LNIEQMNKTSVELFQMYDDHRKRGIIVPSEKEFRGYYALLKLDKHPGYKVEPAELSLDLA
KMTPEMRQTAEVKFARDVARACRTSNFIAFFRLVRKASYLQACLMHAHFAKLRTQALASL
HSGVQNNQGLPISHVRKWIGMEEEDIEGLLEYHGFSIKVFEEPYMVREGPFLNSDKDFAT
KCSKLVHMKRSGMIVTDVSPKSRNEYLITGATKQTPLTWKSKNEYLSTSAIKQIPSKMTK
KQLPIFSFEKISSPRPVSTEKEKESSVHEIDEDMVEFDDPLIPIDPKQVQPMQPMIETSE
VGQLHEYNHGVNGALLLQSGPRSCEPLRTEVKFVGNQGYDGVLVTSPVRNISTGMGMSLP
LVSDAPPQKISVCGYNGNAIGSVEPQSIVNNMMEDEEILYATQENKHDIVTEGCPDEEIA
DARLKLILRLWRRRAVKRKQLREQRLLAAKAAFDTLSVGPPVQLKNHKIRSVGVFDIDHI
LRERWKRQKLSCSVVNVSEVVASSLSGKNVDGKCICWKLVVCSQMDSAGDLVQGTGDSHI
SAGSWLLSKLMPSEANDLVFSSSFLSIWKSWLSGKTGVDSSCFLSVVKHANFDNLPETVR
GASAILFVATQSTTLDLQRVQLHKLLLSIPSGSCLPLLILSDLHDEASASSMLVNKLGLY
DIDKSRICSFQVVSLLDNPHLRHLGFFSDEKLKGGLKWLANESPSQPVLHRVKVLDLIIT
HLDLSMEMLDSMNEKDVSPNQCISAFNLALDQSLADITAAVKANPSNWPCPEIASLASCN
EHGIITDALPPVGWSSAENVEPLKKALMDLKLPTFPDISWLTKGSNMAKEIPTLRDNLEN
CLSCYLTQTSKIMEQQLAMEESHIMLQKCAKLELHKFCYFIVPHWVKIFRRISNWRLRYF
AGRSSYVNIVDCCHGASVVSSVRLESREPPSYTPNQPLLDEVIEVACSSLSIDEGRPLSE
AHQPLAAITSNSRPRELVVTTINFADDGSNNTRQVGFVSSDSIVPNSGRELNCTGKELVA
SDTRYSEAARLKKLLDQCDKRQDAIEKVLSIYY
NT seq
4422 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtatcagggtttcggcaaggcttcaggaccaagcgcaccgccgaaactgcaacat
tctttcggaaattcagcaattcctgattcagtttctcctttacgcgcttctagtcaacat
gaggcattcggcagtagagttcaatcacatcctatggcttttcaaacccctggtactgct
tcaagtcttcatcatcaataccataggcctgtttcaccttcccctatatttgaggaacag
ccaaaggtgcgaggaatgcttcccaactcacaagcttatcaagaccgagcccttccagaa
agatctcatgatcatgatacaaatattcaagcaccaaaaagaaccaaatctcctgagaaa
ccatttgtgaataatcttcggtctgcacagactaatttgttaaggccttctacctctcct
cctagaccattttcttggtcaaatactcaagaagctgtgggctccatgaggaatattaat
gctgaatccgtagttactgagcccactggtgtcctggtttccaaaagaacaaaatcgcct
actttatcatcatcagatcaagtctctggttgcaattctgatcctactcctgatgacact
gaacgagaaaggttagccaaggcaaagagacttgcgcgcttcaaggtggaattagttgaa
gttgcacatagcaaattgggtagtgtggatgcaagggataattcaaatagaaatgaacat
tcaacaacagaaagggacaaatgcatgtcaaatcaatctttggagtcatcaacaaatttg
gctcaagggaattctatgcctgattatgaagctttggaatcttcaagcataataattgga
ctctgcccagatatgtgtccagagtcagagagggctgagcgagaaaggaaaggtgatctc
gaccattatgagaggttggatggggatagaaaccaaactagcaaattgcttgcagttaag
aagtataccagaacagctgagcgggaagctagtcttataaggcccatgccagttttgctg
aaaacaatcgaatatttgcttgagttgttaagtcaaccttatgatgaaaagtttttaggc
atatataactttttatgggataggatgcgagcaattcgcatggatctgagaatgcaacat
ctttttaatgaaaatgccattacgatgctggaacaaatgattcgtcttcacattattgca
atgcacgagttatgcgaattctcaaaaggagaaggatttgctgagggatttgatgctcac
cttaacattgaacaaatgaacaaaacatcagtagaattgtttcaaatgtatgatgatcac
agaaaaagaggcattattgtgccctctgaaaaagaatttcgaggttattatgcacttctc
aagctggacaaacatcctggatataaagttgaacctgcagagctctcacttgatcttgca
aagatgactcctgagatgcgacagactgcagaagtcaaatttgcccgtgatgttgccaga
gcttgtaggacaagtaattttattgcattctttcggcttgtgaggaaagcaagttattta
caagcatgcttaatgcatgctcactttgcgaagttgcgaacgcaggctcttgcatcattg
cactctggtgttcagaataaccaaggactaccaatttctcatgtccgtaagtggattggg
atggaggaagaagatattgaaggccttttagaatatcatggtttttcgattaaggtattt
gaagagccttatatggttcgagaaggtccatttcttaatagtgacaaggactttgctacc
aagtgttcaaaacttgttcacatgaagaggtcaggaatgatagtaaccgatgtctcaccg
aagagtagaaatgaatacttgatcactggtgctactaaacagaccccattgacatggaag
agtaaaaatgagtacttgagcactagtgctattaaacagattccttcgaaaatgactaag
aagcaactaccgatattttcttttgaaaagattagttctccccgtcctgtatcaactgaa
aaagaaaaagaaagttccgtgcatgaaatagatgaagacatggtcgaatttgatgatccg
ctgattccaattgatcccaagcaagtgcaaccaatgcaaccaatgattgaaacatcagaa
gttggtcaattgcatgaatataaccatggggtgaatggtgctctccttctacagtctggt
cccagatcatgtgaaccattgaggactgaagttaaatttgtaggcaatcaaggttatgat
ggtgttctcgtgacctctccagttagaaacatttctactggaatgggaatgtctttacca
cttgtatcagatgcaccgcctcaaaagatatctgtttgtggatataatggtaatgcaatt
ggaagcgtcgaaccacagagcatagtcaacaatatgatggaagatgaagaaattttgtat
gctactcaggaaaataaacatgatattgttacagaaggttgtccggatgaagaaattgca
gatgcaagactcaaattgatcttaaggttatggaggcgccgagctgtaaagagaaaacaa
ttacgtgaacaaagattattagccgctaaagctgcatttgatacattgtctgtgggacca
ccagtccaattgaaaaaccataaaattagaagtgttggtgttttcgacattgatcacatc
ctgagagaaagatggaaaaggcagaaactgtcatgctccgtagttaatgtttcagaagta
gtagctagcagtttgagcggaaagaatgtggatgggaagtgcatttgctggaaacttgtt
gtctgctctcagatggacagtgctggtgatctcgttcagggtacaggagattctcatatt
tcagcaggttcctggttgctttcgaagctcatgccctcggaggctaatgatctagttttc
tcatcttcttttctttccatttggaagagttggctttcaggaaaaacgggtgtggactca
agttgtttcttatccgtagttaaacatgcaaattttgataatcttccagagactgtgagg
ggggcaagtgctatcttatttgttgcaactcagagcaccactctggatcttcaaagagtc
caactccacaagctgctgttgtcaataccttctggttcttgtttgccccttctgattctg
agtgatttacatgatgaggcctctgcatcatccatgctggtgaacaaactcggcttatat
gatatcgataaatcaaggatatgcagttttcaggtcgtttcactcttagataaccctcat
ttgaggcacttggggtttttcagcgatgagaaactcaagggaggattgaagtggctggca
aatgaatcaccatcacaacctgttctgcaccgcgtcaaagtgcttgacctaattattacc
cacttagatttgtctatggagatgcttgattctatgaatgaaaaagacgtttctccgaac
caatgtatctcagcatttaacctagccttggatcagtcacttgcggatattacagctgct
gttaaggcaaatccttcaaactggccttgccccgagatagcttcgttggcgtcttgtaat
gagcatggaattataaccgatgcgttgcctcctgtaggatggagttcggcagaaaacgtc
gaaccacttaagaaggctttgatggaccttaagcttccaacttttcctgatatatcatgg
ttgaccaaaggctcaaatatggcaaaagagatacctaccttaagagataacctagaaaat
tgcttgagttgttatctgactcaaactagtaagatcatggaacaacaacttgcaatggaa
gagtctcatattatgctccaaaaatgtgctaaacttgagctccataagttctgctatttc
atcgttccacattgggtgaagatttttagacggatttccaattggaggctgaggtatttt
gctggcaggtcctcttatgttaatattgtggattgctgccatggagcatctgtagtgagt
agcgttaggcttgaaagtagggaacctccatcttatactcctaaccaaccacttttagat
gaagtgattgaagtagcttgcagttccctctcaattgatgaggggagaccattgtcagaa
gctcaccagcctcttgctgccataacgtcaaatagtaggcctcgtgagcttgtcgttaca
acaataaattttgccgatgatggtagcaacaacacccgacaggtcggttttgttagttct
gacagtattgtgcctaattcgggtcgggaactaaattgtacaggtaaagaacttgttgcc
agtgacacaaggtattcagaagcagcaagactaaaaaagctgttggatcagtgtgacaaa
cgacaggatgccatagaaaaagtattgtctatttattactaa
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