Cucurbita pepo subsp. pepo (vegetable marrow): 111789760
Help
Entry
111789760 CDS
T05351
Name
(RefSeq) ATP-dependent helicase BRM-like
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
111789760
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpep03021
]
111789760
03036 Chromosome and associated proteins [BR:
cpep03036
]
111789760
Transcription machinery [BR:
cpep03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
111789760
Chromosome and associated proteins [BR:
cpep03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
111789760
Chromatin remodeling factors
BAF complex
111789760
PBAF complex
111789760
GBAF(ncBAF) complex
111789760
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
DEAD
QLQ
HDA2-3
Bromodomain
AAA_14
Motif
Other DBs
NCBI-GeneID:
111789760
NCBI-ProteinID:
XP_023526208
LinkDB
All DBs
Position
LG03:13155400..13166398
Genome browser
AA seq
2218 aa
AA seq
DB search
MQQQQQQQLASRQSLQQQLLRKSDGNEALLSYQAGGLQGVLVGNNFPQSPGSSHLPQQAR
KFMDMAQQHHSSSQESQNRSQGLEQQAMNHPMHQAYLQYALAAQQKSAMAMQSQHQAKMG
IMSPRSLKDQEMRIGNQKIQELIPAQVSNQASTSLSKNSADHFVRGEKQMEQGQPSTSDQ
RGDPKSSNQFPAMGNLMPVNMTRSMQAPQAQPGIPNMANNQLAMAQMQAMQAWALERNID
LSLPGNANLVSQILPLIQSRMVPHQKGNENNMGSQLSPASVSKQQTNSPFAGKEASAHAN
SLSDVSGQSSSTKARQIASTGPFGQNMNASAVNNTSHASMQQFSVPGMENQLPSRIPVSG
NTIPPVHSSESSGNVNQSTERPLQVKTSLNSPENLQTQYVRQVNRSSPQTALPPSDAGPS
SSTLPQGGHSNQTEQQKFGFTKHQLHVLKAQILAFRRLKKGEGTLPQELLRAIAPPPLDV
QLQQQFLPPGGTSQDKPSGKIMEEMGSGEVTEKDSLSLASSTGHRFPREEVSTGDEKSKM
PTMDVQPMPLAMKETVPLGSSGNDEQQAAVSVKSDQEIDHGCQKPPAKSDFPVERGKAIA
NQAAVPDVTQAKKPAPPSTPPQSKDVGAARKYHGPLFDFPYFTRKHDSFGSAMAVNNNNN
LTLAYDVKDLLFEEGLEVINKKRKENLKKIGGLLAVNLEQKRIRPDLVVRLQIEEKKLRL
LDLQARLRDEIDQQQQEIMAMPDRPYRKFVRLCERQRMELTRQVQASQKAMREKQLKSVF
LWRKKLLEAHWAIRDARTARNRGVAKYHERMMREFSKRKDDDRNRRMEALKNNDVERYRE
MLLEQQTSMPGDAAERYSVLTSFLTQTEEYLHKLGSKITAAKSQQEVAEAAKIAAAAARL
QGLSEEEVRSASACAGEEVMIRNRFMEMNAPRDSSYVNKYYNLAHAVNERIARQPSMLRA
GTLRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNNGPHLIIVP
NAVLVNWKSELHTWLPSVSCIYYVGGKDERSKLFSQEVCALKFNVLVTTYEFIMYDRSKL
SKIDWKYIIIDEAQRMKDRESVLARDLDRYKCQRRLLLTGTPLQNDLKELWSLLNLLLPE
VFDNRKAFHDWFSKPFQKEGPTQNVEDDWLETEKKIIIIHRLHQILEPFMLRRRVEDVEG
SLPPKVSIVLRCRMSAFQSAIYDWIKSTGTLRVDPEDEKLRVQKNPNYQPKVYKTLNNRC
MELRKTCNHPLLNYPYYGDLSKDFLVRSCGKLWILDRILIKLQKTGHRVLLFSTMTKLLD
ILEEYLQWRRLMYRRIDGTTSLEDRESAIVDFNSPDSVCFIFLLSIRAAGRGLNLQSADT
VIIYDPDPNPKNEEQAVARAHRIGQTREVKVIYMEAVVDKISSHQKEDELRSGGSGDLED
DFAGKDRYMGSIESLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRLTLETLLHDEERY
QETLHDVPSLQEVNRMIARSEEEVELFDQMDEELDWTEEMTRYDQVPKWIRASTREVNTA
IANLSKRPSKNILFGGGYGLESSELGSESSLRTERKRGRPKGKKIPNYKEMDDDNGEFSE
ASSDERNGYSVQEEEGEIAEFEDDEFSRGIEVTQLNQDQMEDGAGRDARYDYPRASDIAR
NNHLLEEAGSSGSSSSSRRLTQLMSPVSSQKFGFLSTLDARPSSLSKRLPDELEEGEIAI
SGDSHMENQLSESWIHDREDGEEEQVLQPKIKRKRSLRLRPRPPAERREEKIYSETQSLQ
YGDSSSPSPFLADHKFTKFKNDPEAKPYGDSNSLKHEQNESSSKTRRNLSARKTGPTSKF
HSSPKPSRLNSLTGSTEDAVEHSRESGDGKPSNVGGNSAFGSKMPDIIQRRCKNVISKLQ
SRIDKEGHQIVPLLTDLWKRIQNSSVPSGVSNNILDLRKIDQRIDRLEYNGVMELVFDVQ
FMLKGAMQFYGFSYEVRVEAKKVHDLFFDILKIAFPDTDFREARNALPFSSPGSSAAAAS
LRERPVSQTKRQKMINDMDADSGPPRKSLQRGTMSGEETRATRGHLLAQKESRFGSGSGS
KDQYETEEPPVLTHPGELVICKKKRKDREKSIVKPRTASGGPVSPPSVARGIRSPGPGSV
SKDSKQSHPSSHSQGWPNQPQSAKGGGGGGGGGGGPVSWANPVKRLRTDAGKRRPSHI
NT seq
6657 nt
NT seq
+upstream
nt +downstream
nt
atgcagcagcagcagcagcagcagctagcgtctaggcagtcgctacaacaacaattactc
agaaaatctgatggaaatgaagcccttctatcttatcaagctggtggtctccaaggagta
ttagttgggaacaactttcctcagtcacccggttcgtcgcatttgcctcagcaagcgaga
aaattcatggatatggctcaacagcatcatagttcctctcaggagagccaaaacaggagc
caaggacttgagcagcaagcaatgaatcatcctatgcatcaagcttatctgcaatatgcc
ttggctgctcagcagaagtctgcgatggctatgcaatcgcagcatcaggctaaaatggga
attatgagccctcgctctcttaaggatcaggagatgcgaattggaaatcagaaaattcag
gaacttattccggctcaggtgtctaatcaagcatcgacatctttatctaaaaactcagca
gatcattttgtacgcggtgaaaaacaaatggagcagggacaaccatcaacttctgatcag
agaggcgatccaaaatcttctaatcagtttcctgccatgggcaatttgatgcctgtgaat
atgaccaggtctatgcaggcaccacaagctcaaccgggaatccctaacatggcaaacaac
cagcttgctatggcccagatgcaggctatgcaagcatgggctctagaacgcaatattgat
ctttcactacctggaaatgcaaacttggtttcacagattcttccactgatacagtctaga
atggttcctcatcaaaaaggaaatgaaaacaatatgggatcacagttatctcctgcttct
gtctccaaacagcagaccaattctccgtttgctgggaaagaggcttctgcccatgctaat
tcattgagtgatgtatcgggacagtcaagcagcacgaaagccaggcagatagcttcaaca
ggcccttttggtcaaaacatgaatgccagtgctgttaataacactagccatgccagcatg
cagcagttcagcgttcctggcatggaaaaccaattaccttctagaataccagtttctggg
aatacaatacctccagtacattcttctgaatcatctgggaatgtgaaccaaagcactgaa
cgtccacttcaagtaaaaacatcgttaaatagcccagagaatttgcaaacacagtatgtc
aggcaggtgaatcgatcctctccacagactgctcttcctcctagtgatgcgggtcctagc
agttcaaccttaccacaaggtggacactctaatcagacagaacaacagaaatttggtttc
accaaacatcaattgcatgtcttaaaagcccaaattctagcatttaggcggctgaagaaa
ggagaaggtacactgccacaagagcttctaagggctattgctccaccacctctggatgtg
caactgcagcagcaatttctacctcctggaggtactagtcaggataaaccatctgggaag
attatggaagaaatggggagtggggaggttactgaaaaggactccctgtctcttgcatcg
agtaccgggcatagatttccaagagaggaagtttcaactggagacgaaaaatcaaagatg
ccaactatggatgtgcaacctatgccccttgcaatgaaggaaacagttcctttgggatct
tccggaaatgatgagcaacaggcagcagtctctgttaaatcagatcaggaaattgatcat
ggttgtcaaaagcctcctgctaaaagtgattttccagtagaaaggggaaaggctattgca
aaccaagctgctgtaccagatgttacacaagctaagaaaccggccccacctagtactcca
ccccagtcaaaagatgttggtgctgctaggaagtatcatggacccctttttgacttccca
tacttcactaggaagcatgactcatttggttcagcaatggcagttaataacaataataat
ttaacattggcttatgatgtcaaagatcttctctttgaggaaggtctggaagttattaat
aagaaaaggaaagaaaatttaaagaagattggtgggttactggctgtcaacttagagcag
aaaagaatccgacccgatttggtagtacgattgcaaattgaagaaaagaagcttcgactt
ttagatctacaggcacgcctaagggatgaaattgatcaacagcagcaagagataatggca
atgcctgataggccctataggaagtttgtgcgcctatgtgaacgccaacgtatggagcta
actcgacaagtacaagcctctcagaaagccatgagagaaaagcaactgaaatctgtcttt
ctgtggcgtaaaaaacttctagaggctcattgggccatccgtgatgctcgcactgcacgt
aatagaggagttgccaaatatcatgagagaatgatgagggagttttcgaaaagaaaagat
gatgatagaaacagaaggatggaggctttaaagaacaatgatgttgaaagatatagagaa
atgttgttggagcagcagacaagcatgcctggtgatgctgctgaaagatattctgttctg
acctcatttttgactcagacggaagaatatcttcataagctaggaagcaaaataacagca
gccaagagtcaacaggaggtggcagaggccgcaaagattgctgcagctgctgcccgattg
cagggtctttcagaagaagaagttaggtcggcatctgcttgtgcaggagaggaagttatg
ataagaaaccgttttatggaaatgaatgctccgagggatagttcatatgtgaacaagtac
tataaccttgctcatgctgtgaatgagagaattgcgaggcaaccctcaatgttacgggct
ggaaccttgagagactatcagcttgttgggttacaatggatgctttcactgtataacaat
aaattaaatggaatcttggccgatgagatgggccttgggaagacggtgcaggtaatggcc
ttgattgcttatttgatggaatttaaagggaacaatggccctcatctcataattgtcccc
aatgctgttttggtcaactggaagagtgagctccatacatggctaccatctgtatcatgc
atttattatgttggtgggaaggacgaacggtcaaaattattttcgcaagaggtttgtgcc
ttgaaatttaacgttctcgtgacgacttatgagtttatcatgtatgatcgctcaaagctg
tcaaaaattgattggaagtatattataattgatgaagcccaaagaatgaaggatagggaa
tcagttctagctcgtgaccttgataggtacaaatgccagaggcgtctgctcctaactggg
acgccattacagaatgatttgaaggaactatggtcgctgcttaatctgcttcttccagaa
gtgtttgataatcgaaaagcttttcatgattggttctcgaaaccctttcagaaggaaggc
cctacccagaatgttgaagatgattggcttgagacagaaaagaaaattattattatccac
cgacttcatcaaattcttgaaccttttatgctccgtcgtcgtgttgaagatgttgaagga
tcacttccaccaaaggtttccatagtgttgaggtgtaggatgtctgcctttcagagtgct
atatatgactggatcaagtccactggcactcttcgtgttgatccggaagacgagaaactg
agagttcaaaaaaatccgaattaccaaccaaaggtatataaaacattaaataatagatgc
atggaactaaggaaaacttgtaaccaccctttgctcaactatccatattatggtgactta
tccaaggacttccttgtaagatcatgtggaaaactgtggatcctggataggatccttata
aaacttcagaaaacagggcatagagtacttctttttagtacaatgacaaaattacttgat
atattagaggaatacttgcaatggcgacgactcatgtatagaagaattgatggaacgact
agtttggaggatcgtgaatctgccatagtggacttcaatagtcctgattctgtctgcttt
atattcttactaagtatacgagctgcaggtcgtggtcttaatcttcagtctgctgacacg
gttattatttatgaccctgatcctaacccaaaaaatgaggagcaagctgttgctagagct
caccgtattggacaaacaagagaagtcaaagtcatctacatggaagcagtagttgacaaa
atctctagtcatcagaaagaagatgaactaagaagtggcgggtctggtgatttagaagat
gattttgctggcaaggatcgatatatgggatccatcgagagtcttataaggaataacatt
cagcaatataagatagatatggcagatgaggtcatcaatgctgggcgttttgaccagaga
acaacacatgaagaaaggcgcctgactttagagacattgttgcacgatgaagagcgatat
caagaaactcttcatgatgtaccgtcacttcaggaggtgaatcgaatgattgctagaagt
gaagaggaggttgaactgtttgatcaaatggatgaagaacttgattggaccgaggaaatg
acgaggtatgaccaggtaccgaagtggattcgagcaagtacaagagaagtgaatactgcc
attgctaatttatcaaaaagaccttcaaaaaatatattgtttggtggtggttatggcttg
gagtccagtgaacttggctctgagtcgtccctcagaaccgaaagaaaaagaggccgacca
aagggtaaaaagatccccaattacaaggaaatggatgacgataatggagagttctcagaa
gcaagttccgatgagagaaatgggtactctgtacaggaagaagagggagaaattgcagaa
tttgaagatgatgaattcagtagaggtattgaggtgacacaacttaaccaggatcagatg
gaagatggtgcaggtcgtgatgctaggtatgattatcctcgggcgtcagatatcgctaga
aataatcatttgcttgaagaagctggctcttccggctcctcttccagcagtcgaaggttg
acacagttgatgtcgcccgtttcttctcagaaatttggcttcttgtctaccttagatgcc
aggccgagttccctctcaaagagactgcctgatgaactagaggaaggggaaattgcaata
tctggcgactctcatatggagaaccaactatcagaaagttggattcatgatcgtgaagat
ggcgaagaggagcaggtactgcaacccaagataaaacgtaaaaggagtcttaggcttagg
ccacgccctcctgcggaaaggcgggaagagaagatatatagcgaaacacaatctcttcaa
tatggagattcttcgtctccttctccgtttctagcagatcataaatttaccaaatttaag
aatgatcctgaggctaaaccatatggagattctaattccttgaagcatgaacaaaacgaa
tcatcttcaaagactcggcgtaatttgtctgctagaaagacgggtcctacatcaaaattt
cactcttctcctaaacctagcagattaaattctttgactggatccacagaagatgccgtt
gaacactctagagaaagtggggatggcaaaccatcgaatgttggtggaaattcagctttt
ggttctaagatgccagacataatccagaggaggtgcaagaatgttatcagcaagcttcag
agtagaatcgacaaggaagggcatcaaattgtgccgttgttaacagatttgtggaaacgg
atccagaactctagcgttccaagtggagttagtaataacattttggatctacggaagatc
gatcaacgtatagacagattagagtacaatggggttatggagttggtgtttgatgttcag
ttcatgttgaagggtgctatgcagttttatgggttttcatatgaggttagagttgaggcc
aaaaaagttcatgacctcttctttgatattctgaagattgcatttccagacacggatttt
cgagaagctcggaacgctctgcctttctctagcccggggtcttctgctgctgctgcttct
ttgagggagagacctgtcagccaaaccaaaagacaaaagatgataaatgatatggacgcc
gactcaggcccgcctcggaaatcactgcagcgtggaactatgtctggggaagaaacaagg
gccaccagaggtcacttgttggcacagaaagaatcaagatttggcagcggaagtggaagt
aaggatcaatatgaaacagaagaacccccagttcttactcatcctggggagctagttatc
tgcaagaagaaaagaaaagacagggaaaaatcaatagtcaagccgaggactgcatctggc
ggcccggtctcgccgcctagcgttgcccgtggcattagaagtccaggtcccggttcagta
tccaaagacagcaaacaatctcacccctcttcacattctcaaggatggcccaaccagcct
caatctgctaaagggggcgggggcgggggcgggggcggcgggggacctgtgagttgggca
aatcctgtgaagagattaagaacagatgcaggaaagaggaggcccagccatatctga
DBGET
integrated database retrieval system
