Cucurbita pepo subsp. pepo (vegetable marrow): 111789976
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Entry
111789976 CDS
T05351
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog isoform X1
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
111789976
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cpep04131
]
111789976
Membrane trafficking [BR:
cpep04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
111789976
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Vps8
Beta-prop_VPS8
VPS8_N
TPR_Vps41
Clathrin
Beta-prop_WDR36-Utp21_1st
WDR55
Beta-prop_EML
WD40
WD40_Gbeta
WD40_CDC20-Fz
Beta-prop_WDR3_1st
TPR_VPS8_2
Beta-prop_EML_2
Beta-prop_WDR5
Beta-prop_HPS5
ANAPC4_WD40
Beta-prop_RIG_2nd
WD40_WDHD1_1st
zf-RING_Vps41
WD40_Prp19
zf_RING_Vps8
Beta-prop_THOC3
zf-RING_2
Beta-prop_TEP1_2nd
zf_RING_Vps8_fungal
Motif
Other DBs
NCBI-GeneID:
111789976
NCBI-ProteinID:
XP_023526489
LinkDB
All DBs
Position
LG03:complement(13689616..13708011)
Genome browser
AA seq
1968 aa
AA seq
DB search
MTKELTDTETLPPMELDLNAFIHAHLSSGDDDHDHDEDDLSFPHRSIDEILNESSSSTSS
SPSSPPNSPPPRARRSIAARDGRASASRSIPPFKSPFEEIIKASKVPRSNQRNEKSVQLK
PGSVSHTKVGELTDDPFRRGSRALPSLFGGVRSNAKPGAALAAAAAASRSMPAPHAAAIK
SRRSGHGSVVLDDDELASSSAVDSEFVFDDLYSTIDHSKESREKSISLVERNADYQGASV
NVGVEFWARDNIRDCVLYNDEFRITKDTECEAEQSFVDDVNFDESSTTLPPVEANGRSLS
DSADNNVCSMDAEPTVLDGDESNEGAFPCSPKPDYDRSAVGYGRLELETQDFEKRSQPSK
DSEVLAIEDLSVVNDISESRETAKQLDNFHTGERAETMSLSSSNPLELAEEIEKKQAFTA
LHWEEGVAAQPMRLEGIKGGTTALGYFDIQADNSISRTISSHSFKREHGFPQALAVHANY
IAVGMSKGNIVVVASKYSAQNGDNMDAKMLLLGSQGDKSTAPVTSLCFNQQGDLLLAGYS
DGQVTVWDVLRATAAKVISGEHTSPVVHSLFLGQEAQVTRQFKAVTGDSKGLVLLHTFSV
VPLLNRFSIKTQCLLDGQKTGTVLSASALLLNEFCGSSLPPSLSNVAVSTSSIGSMMGGV
VGGDSGWKLFNEGSSLVEGVVIFATHQTALVVRLSPTVEVYARLSKPDGIQEGSMPYTAW
KCSQSIETSPSEAVERISLLAIAWDKMVQVAKLVKTELNVCGKWSLESAAIGVAWLDDQV
LVILTVTGQLFLFEKDGTMIHQTSVFVDGFDKEDFIAHHTHFVNVLGNPEKAYHNCVAVR
GASVYVLGPKHLVISRLLPWKERVQVLRKAGDWMTALSMAITIYDGHAHGVIDLPRSLES
LQELVMPFLIELLLSYVDEVFSYISVAFCNQIEKNEKLDDVTSGSHSAHSEIKEQYNRVG
GVAVEFCVHITRTDILFDEIFSKFVAVQQRDTFLELLEPYILKDMLGSLPPEIMQALVEH
YSQKGWLQRVEQCVLHMDISSLDFNQVVRLCRDHGLYSALVYLFNKGLDDFRTPLEELLA
VLQTSKSKRASAIGYKTLVYLKYCFSGLAFPPGQGTLAHSRVQSLRDELLQFLLENSDTV
DTRSISNKSSEVGYLNLYHLLELDTGATLDVLRCAFVEGEIVKADSSLDGSVDASMQVQK
EKNSTSGRKNFLVQNVVDALVHILDKAISQTYGSPGGDNITLVEDWPSKKDLFHLFDFVA
NYVACGKATASKDVVGQILEHLISNSDIPEMEIDFVHSVTANSVHSRKREKQVLSLLEVI
PETHWNPSSVLRMCEKAQFFQVCGLIHSISHQYSSALDGYMKDVEEPIHAFAFINRTLME
LSNSEQTEFRGVVISRIPELLNLNREGTFFLVIDHFGNDVSDILSRLHNHPRSLFLYLKT
LIEVHQSGNLNFSCLKKDDNFGVNYSTKGLDDYLQKLSDFPKFLSNNPVDVTDDIIELYV
ELLCRYERESVLKFLETFDSYHVEHCLRLCQQYEVIDAAAFLLERVGDVGSALFLTLSSL
DKKFHDLEAAVGGIVTNGASSGSNDSQLFSSVLKLQEVNDIYVLLHACIGLCQRNTPRLN
SEESETLWFKLLDSFCEPLIESFNYRTASFGENQVQFLNESSGSQKDKEAHIVTWRILKS
NQTAHILRSLFSRFIREIVEGMIGYVHLPTIMSRLLSDNGSQEFGDFKLTILGMLGTFGF
ERRILDTAKALIEDDTFYTMSLLKKGASHGYAPRGAVCCICNRLLVKSSSSYRVRVFNCG
HATHLQCEVLDNEASGGDFSCPVCVHSNHSQRSRGKALTEYSLVNKFSSRTQSSSGASVS
YPQETDLLELPYTLQQIPRFEILANLQKNQRVIDIENMPQLRLAPPAVYHDKVTKGYHLL
VGDSSGGVEKVEKLNKSRQLKEVKVKRPSSLRFPLKANLFGKEKTTKS
NT seq
5907 nt
NT seq
+upstream
nt +downstream
nt
atgaccaaggagctgactgacaccgaaacactgcctccaatggagctggacttgaatgcc
ttcatccacgcacacctctccagcggcgacgacgaccacgaccacgacgaagacgaccta
tcattccctcaccgtagcatcgacgagattctaaacgaatccagttcttccacctcatct
tcaccatcgtctcctcccaattcaccgccgcctcgtgcccgtcgctccatcgccgcaagg
gacggcagggcctctgcttctcgttctataccaccattcaagtcaccgtttgaggaaata
ataaaggcttctaaagttcccagaagcaaccaacggaatgagaagtcagttcaattgaaa
ccaggttcggtctctcatactaaggttggtgaattaacggacgatccatttcgaagggga
tctcgtgcattgccatcgttgtttggaggggttagatcgaatgccaaacctggggcggcg
cttgccgcagctgctgcggcttctcggtccatgccggctccgcacgctgcagcaatcaag
tcgaggaggtcaggacatgggagcgtggttcttgacgatgacgaattggcttcctcttct
gctgttgattcagagtttgtctttgatgatttatattctactatcgatcattcaaaggag
tctcgcgaaaagtcaatttcattggtcgaaaggaatgccgattatcagggtgcatctgta
aacgtcggtgttgaattttgggcaagagacaacattcgagactgtgtcctatataacgat
gagtttcgtataactaaagatacggaatgcgaagcagaacagagttttgtggatgatgtg
aatttcgacgagagctctacaactctgccgccagtggaagctaacggtagaagcttgtct
gattctgctgacaacaatgtttgttcaatggatgcagaaccaacagtattggatggcgat
gaatcaaatgaaggggcctttccgtgttctcccaaacctgattacgacagaagtgccgtg
ggctatgggaggctggagttggaaactcaagatttcgagaaacgttctcaaccatcaaaa
gattcggaggttctagccattgaggatctcagtgtagtgaacgatatcagtgaatcgagg
gaaacagccaagcagctggataactttcacaccggtgaacgtgcagaaacgatgtccctg
tcctcgtctaatccactcgaattggccgaagaaattgaaaagaagcaagctttcactgca
ctgcattgggaagaaggcgtagctgctcaaccaatgaggcttgaaggtattaagggaggc
acaacagcattggggtacttcgacattcaagctgacaatagtatttcaagaactatttca
tcacattcgttcaagcgtgaacatggttttccccaagccttggctgttcatgcaaattat
attgcagttggaatgtcaaaaggaaatattgttgtggtggccagtaaatactcggctcaa
aatggcgacaacatggatgcgaagatgctgctgcttggatcacaaggtgataaatcaact
gcgccagtaacatctctatgctttaatcagcaaggggaccttcttctggctggttacagt
gatggtcaggttacagtctgggatgtgttgagggcgacggcagccaaggttatttccgga
gaacacacatcaccagttgttcattcattgttccttgggcaggaggctcaggttactcga
caatttaaagcagttactggcgatagtaagggtctggttttgttacatacgttctcagtg
gttcctttgctaaatagattctccattaaaactcagtgtcttcttgatgggcaaaaaacg
gggactgttctatcagcttcagcacttcttttgaatgaattctgtggaagttctttgcca
ccatctctttcaaatgtcgcagtttcaaccagcagtattgggagcatgatgggaggggtt
gttggaggagattcaggctggaaactcttcaatgaaggatcatctttggttgaaggagtt
gtcatatttgctacccatcaaactgctctggtggtaaggctgagtcccactgtggaagtg
tatgctcggctctctaagccagatggaattcaggaaggttctatgccttacactgcatgg
aaatgctcacagtctattgaaacttcaccttctgaagcagtagaaaggatttcgttgctt
gcaattgcctgggataaaatggttcaggtagcaaagttggtgaaaacagagcttaatgta
tgtggcaagtggtcccttgagagtgcagccataggtgtggcatggttagatgaccaggtt
ctagtcattctcacagtaacaggacaactcttcttatttgagaaggatggaaccatgatt
caccagacaagtgtatttgtagatgggtttgataaggaggatttcattgcacatcacacc
cactttgttaatgttttgggcaatcctgagaaagcgtatcacaattgtgtagctgttaga
ggagcttcagtatatgtgttgggaccaaagcatctcgttatttcccgtctccttccatgg
aaggagcgggttcaggttctaaggaaagcaggggactggatgactgcccttagcatggca
ataacaatttatgatggccatgctcatggtgttattgatctccctaggtcgttggagtcc
ttgcaagagttggtaatgccctttctgatcgagttgctgttatcatacgtggatgaagtg
ttttcatatatttcagtggctttttgtaaccaaattgaaaagaatgaaaaattggatgat
gtaacgagtggaagccattctgcacattctgaaataaaagagcaatataatcgtgttggt
ggagttgccgttgagttttgtgtccatatcacgaggactgatattctctttgatgaaatt
ttctccaaatttgtggctgttcaacagagagatacatttttggagcttctagaaccatat
attttaaaggacatgcttggatcattgcctccggagattatgcaagctttggtagagcat
tatagccaaaaaggatggttgcagcgtgtagaacagtgtgttcttcacatggatatttct
tccttagattttaatcaggttgttaggttatgccgggatcatggattgtatagtgcattg
gtgtatcttttcaacaaaggattagatgatttcaggacgcctttagaggagctgttggca
gtgttacaaaccagtaaaagcaaacgtgcttctgccattgggtacaagacactagtttat
ctgaaatattgcttttcaggacttgcttttccaccaggccaaggaactcttgctcattca
cgcgtgcaatctcttagagatgaactactacagtttttgttggagaattctgataccgtg
gatacaagatcaatttcaaataaatcatctgaagttggatatttaaatctgtatcatctc
ttagagttagatactggtgctactttagatgttttgagatgtgcttttgttgaaggtgaa
atcgtcaaagctgattcttctctagatggttcagtggatgcaagtatgcaggtacaaaaa
gaaaagaactcaacttctggaagaaagaactttctagttcaaaatgtagtcgatgctctt
gttcatattcttgataaggctatcagtcaaacatacgggtccccaggtggcgataatatc
acattggttgaagattggccttcgaagaaggacttatttcatttgttcgattttgttgcc
aattacgttgcgtgtggaaaggctactgcctctaaggacgtagttggtcagattttggaa
cacttgatatccaatagtgatattccagaaatggaaattgattttgtgcatagcgttact
gcaaacagtgtacattcaagaaaaagggaaaagcaagtactttctctcttggaagtgata
ccagagacccattggaatccgtcttctgtgttaagaatgtgtgagaaagcacaatttttc
caggtttgtggcctaattcatagcatcagtcatcagtattcatcagctttggatggctac
atgaaagatgtagaggaacccattcatgcttttgcctttatcaacagaacattaatggag
ctcagcaattctgaacaaactgaatttcggggagtggtcatttctcgaattccagagctt
cttaatttaaacagagagggaacattcttcttggtcattgatcatttcggcaatgatgtt
tcagacatcctctcccggcttcataatcatccaagaagcctatttctgtacttaaaaact
ctcattgaggttcaccaatctggaaacctgaacttctcttgcttaaagaaagatgataat
tttggggtcaactattcaactaaaggattggatgattacctgcaaaaactctctgatttc
cctaaatttctgtctaacaatcctgttgatgtgactgatgatataattgagctttatgtg
gagctactttgtcggtatgaacgtgaatcagttctcaagtttttggagacttttgatagc
tatcatgtggagcattgtttgcgcctctgccaacagtatgaggttattgatgctgcagca
ttcttgttggagagggttggtgatgttggtagtgctcttttcttaacactttctagccta
gacaaaaaattccatgacctagaggctgctgtgggaggcattgttacaaatggtgcttca
agcggttctaatgattcacaacttttcagctctgttttaaaattgcaagaggtgaatgat
atatatgttttgttgcatgcttgtattggactgtgccagcgaaatactcctcgtttgaac
tctgaggagtctgagacactttggttcaaattactcgactcgttttgtgagcctttaatt
gaatcatttaattatagaactgcttcttttggagaaaatcaagttcaattcttgaacgag
tcatcaggttcacaaaaggataaagaagcacatatagttacatggagaattttgaagtcc
aatcaaactgctcatatattaaggagtttgttctctcgatttatcagagagatagttgag
gggatgataggatatgttcatcttccaacgatcatgtccagacttctctctgacaacgga
agtcaagaatttggcgattttaaacttaccatacttgggatgcttgggacttttggcttt
gaaagaagaattctggatactgccaaagctttaattgaggatgacacgttctataccatg
agtttattgaagaaaggggcatctcacggatatgctccccggggtgctgtctgttgcata
tgtaatcgccttcttgtcaagagctcatcaagttacagagttcgagtttttaactgtggt
catgcaactcatcttcagtgcgaagttcttgataatgaggcttcaggtggagacttctca
tgcccagtttgtgtgcatagcaatcactctcaacggtctagaggcaaagcactgactgag
tacagtctagtgaataaattttcatcaagaactcaatcgtcgtcaggagcttctgtttca
tatccacaagaaacagatttattggagcttccatacactcttcagcaaataccacggttt
gagattctggctaacttacagaaaaatcagagagtaatagacatagaaaatatgcctcaa
ttgaggcttgcaccaccagccgtctaccatgacaaggtcacaaaaggatatcatctttta
gtaggagatagcagcggtggagtagaaaaagtagaaaaactaaacaagagcaggcaactg
aaggaggtaaaagtaaagagaccgtcctcccttcgattccctttaaaagcaaatctattt
gggaaagagaagacgaccaaatcttga
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integrated database retrieval system
