Cucurbita pepo subsp. pepo (vegetable marrow): 111790094
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Entry
111790094 CDS
T05351
Name
(RefSeq) CCR4-NOT transcription complex subunit 3-like isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111790094
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpep03019
]
111790094
Messenger RNA biogenesis [BR:
cpep03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
111790094
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
111790094
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5965
Motif
Other DBs
NCBI-GeneID:
111790094
NCBI-ProteinID:
XP_023526664
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Position
LG03:complement(6146116..6165594)
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AA seq
908 aa
AA seq
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MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNSNQKEKFEADLKKEIKKLQRYRD
QIKTWIQSSEIKDKKVSASYEQALLDARKLIEREMERFKICEKETKTKAFSKEGLGQQPK
TDPKEKAKSETRDWLNNVVSELESQIDNFEAEVEGLSVKKGKQRPPRLVHLETSITRHKA
HIMKLELILRLLDNDELSPEQVNDVKDFLEDYVERNQEDFDEFSDVDELYSSLPLDKVES
LEDLVAICPPSLWQGTPALNLKTSVATLATQVPVTGAPNLQQNTVIPDQVDDSTLPDGNT
DTLLKNPPPKNSVLGSSAATSPTGNHATSASLNGAGHGSALSATSAILTGSSAVRAVLET
TGASNSSPVNMPTSAKDEEIASFPGRKLSPSFSDSGLVRGGMGRAVITNQPPSTSSHTSG
IVVPSTIILGSVPSTSEVTMRNIMGAEERAGNSGMVQSMVSPLSNRIVLPTAAKVSDGTT
TVDPSNVSDAAAIGGRVFSPSVVPSMQWRPGSSFQNPNEGGQFRGRAEIAPDQREKFLQR
LQQVQQQGHSTLLGMTLGGGNHKQFSSQQQSSLLQQFNSQNSSVTSQAGLGIGVQAPGVN
AVTSGSLQQQPTSFQQSNQQALMTTGAKDSDVAHSKVEEEQQQQQQQQSLPEDTTDSASA
SASASASVLGKNLMNDDDLKGSYAVDTPAGVPASLTETASVSREDDLSPGQPLQPGQPSG
SLGVIGRRSVSDLGAIGDSLGGSSMATGGMHDQFYNLQMLEAAYYKLPQPKDSERPRSYT
PRHPAITPPSYPQVQAPIINNPAFWDRLGLETYGTDTLFFAFYYQPNTYQQYLAARELKK
QSWRYHRKYQTWFQRHEEPKVATDEYEQGTYVYFDFHVNNDDLQHGWCQRIKTEFTFEYN
YLEDELNI
NT seq
2727 nt
NT seq
+upstream
nt +downstream
nt
atgggtgcgagtcggaagctccaaggggaaattgaccgagttcttaagaaggtacaagaa
ggggttgacgtctttgacagcatttggaacaaggtttatgataccgacaattccaaccag
aaggagaaatttgaggcggacttgaagaaggaaataaagaagcttcagaggtacagggac
caaatcaagacctggattcagtccagtgagattaaggataagaaggtcagtgcctcttat
gagcaggctttgttggatgctcgtaaacttattgagcgtgaaatggaaagatttaagatt
tgtgaaaaggagacaaaaactaaagccttctcgaaagaaggtttgggtcagcaacctaaa
actgatccaaaggagaaggctaaatcagagacacgggattggttgaacaatgtggttagt
gagttggaatctcagatagataactttgaagctgaggtcgagggtctgtctgtgaagaag
gggaaacaaaggccacctaggttggttcatcttgaaacatccattacccggcacaaggct
catataatgaagctggaactaatcttgagactgcttgataacgatgaattgagtcctgag
caagtcaatgatgtcaaggacttcttagaagattatgtggaaaggaatcaggaggatttt
gatgaattcagtgatgtggatgagctttacagctcattgccacttgataaggtggaatcc
cttgaagatctggttgcaatttgccctcccagcctttggcagggtacaccagctctcaac
ttgaagactagtgtggcaacgttggcaactcaagtgcctgttactggtgctcctaatctt
caacaaaatactgtcattccagatcaggttgatgattcaactttgccagatggtaacaca
gacactcttttgaagaacccacctcctaagaatagtgtccttggttcttctgcggctaca
tcacccaccgggaaccatgctacctcagcatccttgaatggtgcagggcatgggtctgcc
ttgtccgctacatcagccattcttacaggttcaagtgctgttcgtgctgtattggagact
acgggtgcttctaattcatctcctgtaaatatgcccacttctgcaaaggatgaagaaatt
gctagcttcccaggccgtaaactatctccatcattttcggattctggacttgtaaggggt
ggcatgggaagagctgtcattactaatcagccaccctccacttcctcccatacttctggt
attgtggttcctagcactataattcttggtagcgttccttctacatctgaagtgacaatg
agaaacattatgggagctgaagaacgggctggtaacagtggcatggttcagtccatggtt
tcccctttaagtaatagaatcgttttgcctacagcagctaaagttagtgatggaacaact
acagttgatcctagcaatgttagtgatgcagcggctataggtggtcgggttttctctcca
tctgtggttcctagcatgcagtggaggccaggaagttcttttcaaaatccgaatgaagga
gggcagtttcgtggaagagctgaaatagcaccagatcagagggagaagttcttgcagcgc
ctccaacaagttcagcaacagggccatagtacacttcttggcatgactcttggtggagga
aatcacaagcaattttcttcacaacagcaaagttcacttcttcagcagttcaactcccaa
aattcatctgttacttctcaagctggtctgggaataggagttcaagcacctggagtaaat
gctgttacctctggctcattacagcagcagccaacttccttccagcagtctaatcagcaa
gcattaatgacaactggggcaaaagattctgatgttgcccattcaaaagttgaggaggag
cagcagcagcaacagcagcaacaaagtttacccgaggatactactgattctgcttctgct
tctgcttctgcttctgcttctgtccttggaaagaatctgatgaacgatgatgacttaaaa
ggatcatatgcggtagatactccagctggtgtacctgcttcattgaccgagactgcttca
gtgtcaagagaagatgacctttctcctggtcaacctttgcagcctggccaaccttctgga
agtcttggtgtcattggccgaagaagtgtttctgacttgggtgccattggtgatagcctt
ggtggatcctcgatggctactggaggaatgcatgatcaattctacaatttgcaaatgctt
gaagctgcatactataagctacctcagccgaaagactcagagcgtccaaggagttatact
ccaagacaccctgcaattactcctccgagctatcctcaagtacaggcacctattataaac
aatcctgctttttgggatcgattaggtctcgagacctatggcactgacacattgttcttt
gcattttactatcaaccgaacacctatcaacaatatttggctgctagagaattaaagaaa
caatcttggagatatcacagaaaataccagacatggttccaaagacatgaagagccaaaa
gttgctacagatgaatatgagcagggaacttatgtgtacttcgattttcatgttaataat
gatgacctacaacatggatggtgccaaaggattaaaaccgagttcacttttgagtataac
tacctcgaagatgaactcaatatatag
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