Cucurbita pepo subsp. pepo (vegetable marrow): 111790150
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Entry
111790150 CDS
T05351
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 8-like
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111790150
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpep03019
]
111790150
03036 Chromosome and associated proteins [BR:
cpep03036
]
111790150
Enzymes [BR:
cpep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
111790150
Messenger RNA biogenesis [BR:
cpep03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
111790150
mRNA degradation factors
5'-3' decay
Decapping complex
111790150
Chromosome and associated proteins [BR:
cpep03036
]
Eukaryotic type
Gene silencing
piRNA pathway
111790150
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
TFIIA
Motif
Other DBs
NCBI-GeneID:
111790150
NCBI-ProteinID:
XP_023526747
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All DBs
Position
LG03:13059762..13065385
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AA seq
497 aa
AA seq
DB search
MNNRGRYPPGIGAGRGGGVNANPSFQSRPHQQQYVQRNLVPNQQYQQQHHQNQHQHQQLQ
QHQQWLKRNQLGGGPADSNVDEVEKTVQSEAVDSSSQDWKARLKIPPPDTRYRTEDVTAT
KGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIP
ALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKNLNIQVMVTTGGTSLKDDIMRLYQ
PVHLLVGTPGRILDLAKKGVCVLKDCSMLIMDEADKLLSPEFQPSIEHLIRFLPSNRQIL
MYSATFPVTVKDFKDRYLHKPYIINLMDELTLKGITQFYAFVEERQKVHCLNTLFSKLQI
NQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLF
TRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELG
TEIKQIPPHIDQAIYCQ
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
atgaacaataggggaaggtatccacctgggatcggcgctggacggggcggaggcgtgaat
gcgaacccttcgtttcagtcaagaccacaccagcagcaatacgtacaaagaaatttggtg
ccgaatcagcagtatcaacaacagcaccatcagaaccagcaccaacaccagcagcttcaa
caacaccaacaatggctgaaaaggaaccagttaggtggcggtcctgccgattccaacgtt
gacgaggttgagaagaccgtgcagtctgaggctgttgattcgagttcacaagattggaag
gcaaggctaaagattccgccacctgatacacgctatagaacagaggatgtgacagctacg
aaaggaaatgaattcgaggactattttttaaaacgtgaattactcatgggaatctatgag
aaagggtttgaaagaccatctcctattcaagaagaaagtattccaattgctttaaccggt
agtgatattcttgctagagcaaaaaacggaactggaaagacagctgcattttgcattccc
gccttggaaaagattgatcaggataacaatgtaatccaagttgttatccttgttccgaca
cgagagttggctcttcaaacttcacaagtttgtaaggaactcgggaagaatttgaatatt
caagttatggttacgacaggtggtaccagcttaaaggatgatatcatgcgattatatcaa
ccagttcatttattagttggaactcctggaagaatattagatcttgcaaaaaagggtgtt
tgtgtactgaaagactgttctatgcttattatggatgaggctgacaagctcttgtctcca
gagttccaaccttcaatagagcatttgattcgctttttgccttcaaatcggcagattctt
atgtattccgctacctttcctgttactgtgaaggacttcaaagatagatatcttcacaag
ccctatattataaacttaatggatgagctcactttgaagggtatcacccaattctatgca
tttgttgaagaaagacaaaaagttcactgccttaatactcttttctctaagctgcaaatt
aaccagtcgattatcttctgcaattccgtaaatcgagtcgagttgttagccaagaaaata
acggaacttggttattcttgtttctatattcatgcaaagatgctgcaagatcatcgtaat
agagtatttcatgacttccgaaatggtgcatgtagaaatcttgtttgtactgatttattt
acaagaggaattgacattcaagcagtaaatgttgttattaactttgattttcccaagaat
tcagagacatatctgcacagggttggaagatctggaaggtttggacatcttggattagct
gtgaatttaatcacttatgaggatcgtttcaatttgtacaggattgagcaagaacttgga
actgaaataaaacaaataccaccccatattgaccaggcaatctactgccagtaa
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