Cucurbita pepo subsp. pepo (vegetable marrow): 111790321
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Entry
111790321 CDS
T05351
Name
(RefSeq) uncharacterized protein LOC111790321 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
111790321
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpep03021
]
111790321
03019 Messenger RNA biogenesis [BR:
cpep03019
]
111790321
Transcription machinery [BR:
cpep03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
111790321
Messenger RNA biogenesis [BR:
cpep03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
111790321
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
zf-C2H2_REST
zf-met
zf-C2H2_4
AC_N
Motif
Other DBs
NCBI-GeneID:
111790321
NCBI-ProteinID:
XP_023526947
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All DBs
Position
LG03:1194785..1202073
Genome browser
AA seq
1079 aa
AA seq
DB search
MEMESSRRPFDRTREPGLKKLRLADEADRGGNINGRPFPQRPVVSGTNIAQSRFRASDRD
PGSSDSGRVGYQPQPPQHQELVSQYRTALAELTFNSKPIITNLTIIAGENLQAAKAISAT
ICANILEVPTEQKLPSLYLLDSIVKNIGRDYIKYFAARLPEVFCKAYRQVDPSVHTSMRH
LFGTWKGVFPPQTLQIIEKELGFVSSGSSSSGTITSKPDLQAQRPPHSIHVNPKYIERQR
LQQSGRVKGMTSDGTGATTVTQDVAQAKISSGRPWADTPIKGLDIQRPLRDAPNDLAQEK
NVAAAYLDYECGSDLSRTSGVGRRVVDEGQDKSWSLAGNNLAEKLSGQRNGFNNKLGYEN
YPAPKSANTGARLLPMQKFSSGSSNRVLSTNWKNSEEEEFMWGEMNSMLTGHGAPAIASG
TGKDQCTPEDSDNSGTDNKPLSIRDTGASVDREASFDSQSSEQRELGDSGQQRSSMWQFQ
EAISLDGLRGRVPRKNSAQSGGYGATLTAMSGANSSVDQMGGRSQITSSNIGASGHGFLN
KGGSGSLGTVGHPRFPSQSVALPSGQPPLNQRPPSPLVDHVAHKKQSHKTSFPNLDPRRR
HIRDAALGLHPNIRPDNLQKPQPQDLQASASSIPASQTRHRSLKPEVTQSELSSQHAVSI
PDTDFGPPSSAGTVLEVLPAEILGEPSTSSLLAAVMKSGILSNHSIISSMQQNFSSQDVG
NMQPRSSVNPPLPSQSSPAHTQSTFSEPKTVGESSLGPPSLESTSTLVKLSQSKVEDTPL
PSDPLPSPSTMNSASTETSNVVNDDSSPISNLLSSLVAKGLICASKGELASNVTSQMPSQ
PENLKSGDVVTCSIPVPSIPIPSSSQSSIRPESPSKAAAKSSTTPPPSATTEINNLIGYE
FSSHVIRKFHPSVISGLFDDIPFQCKICGLRLKCEEQLDTHLWWHMSRTESNNSCRAPRR
WYPSSVDWVSGNARLLLDAATSLDKSSMMEEDNEPMVPADEDQFACVLCGELFEDFYSQE
LGKWMFKGAMHITIPSVGSEVGSTNERVAIGPIVHISCFTESSIHELGLATDIKKETDV
NT seq
3240 nt
NT seq
+upstream
nt +downstream
nt
atggaaatggagagctcgcggagacctttcgatcgaacgagggaaccgggtttgaagaag
cttcgactggccgatgaggctgaccgcggtgggaacattaatggccggccgtttccgcag
agaccagttgtttccggaaccaatatcgctcaatccagatttcgagcaagcgatagggat
ccgggaagcagtgattctggtcgagtggggtatcagcctcagccgccgcagcatcaggag
cttgtgagccagtacaggacagcccttgctgagctgactttcaattccaaaccaatcatc
acgaatttgaccataatcgcgggtgaaaatctccaggctgcaaaagcgatctctgccact
atttgtgccaacattctcgaggttcccactgagcagaagctgccatcactttatctattg
gacagtattgtaaagaatattggaagagattacataaaatactttgcagcaagactaccg
gaggtattttgcaaagcttataggcaagtcgacccatctgttcatacaagcatgagacat
ctttttggcacctggaaaggagtgtttcctcctcaaactctgcagattatcgagaaagaa
cttggtttcgtgtctagcggtagttcttcttctgggaccataacctcgaagccagatttg
caggcacaacgtccaccccatagtatccatgtaaatcccaagtatattgagaggcaacgc
cttcagcagtcaggcagggtgaaaggaatgactagtgatggtactggcgcaacaactgta
actcaggatgtcgcccaagccaaaattagttctggacgcccgtgggcggacacaccaatt
aaagggcttgatattcagcgtccacttagagatgcaccaaacgatttggcacaagagaag
aacgtcgccgctgcatatctagactatgaatgtggttctgatctttcaaggacatcaggt
gttggaaggagggtcgttgatgaagggcaagacaaatcttggtctttagctggaaacaat
ttggctgagaaattatctggacaaagaaatgggttcaacaacaagcttggatatgaaaat
taccctgcacccaagtctgcaaacactggtgcacgtctactgcccatgcaaaaattttca
agcggcagcagcaacagagtgttgtctactaactggaagaactctgaggaagaggagttt
atgtggggtgaaatgaactctatgttgacaggtcatggtgcacctgccatcgccagtggc
accgggaaagatcaatgtactcctgaggattcggataattcgggtactgacaataagcca
ttaagcatacgggatactggggcaagtgttgatagggaagcttcctttgattcacaatca
tctgagcagagagaactaggggattctggacagcaaaggtcatcaatgtggcagttccag
gaggcaatatctctggatgggctgagaggcagggttcctagaaagaattcagctcaatca
ggaggttatggtgccactctaaccgcaatgtcaggtgctaactcttctgtggatcaaatg
ggaggacgatcacagatcacatcatctaatattggagcttcaggacatgggtttctgaat
aaaggaggttcagggtcccttgggactgtaggccatccaagatttccatcacaaagtgtt
gcattaccatctggacagccacccttgaaccagcgccccccttcaccattagtggatcat
gtcgctcataaaaaacaaagccataaaacttcatttcctaatcttgacccacgtagaagg
catatacgggatgctgcccttggcctgcatcccaacattcggccagataaccttcaaaaa
ccacagcctcaggacctacaagcttcagcttcatctatacctgcttctcaaaccaggcac
cggtcactgaaacctgaagtcacacagtcggaactttctagtcagcatgcagtatcaatt
ccggacaccgattttggaccgccctcatcggctgggacagttctagaagtcttacctgca
gaaattttgggagagccaagcactagtagtttgttggctgctgtaatgaaaagtggaatt
ttgtccaaccattcaataatcagtagcatgcaacagaatttcagctcccaagatgtggga
aatatgcaaccccgttcaagcgtcaaccctcctctaccaagtcagtcttctcctgcccat
actcagtctacattctcagagccaaagactgtgggcgaatcttcattaggtcctccatct
cttgaaagcacatcaacgctggttaagttatctcagagtaaggtagaagacacaccgttg
ccatctgatccacttccttctccatctactatgaatagtgcatccactgaaacttcaaat
gtggtaaacgatgattctagtccaatttctaaccttttgagctcattggttgcaaagggc
ctcatatgtgcttctaaaggagaattagcaagtaacgttacatcccagatgccttcacag
cctgaaaatttgaagtcaggtgatgttgtgacttgttctataccagttccttccatccct
attccctcttccagtcaatcatctataagacctgaatcaccttcaaaagctgctgctaag
agctccactactccacctccatctgccacaactgagataaacaacctcataggctatgag
tttagttcacatgttattcgcaaatttcatccatctgtgatcagtggactctttgacgat
attccatttcaatgtaagatctgcggtcttagactgaaatgtgaagaacagttggatacg
cacttgtggtggcacatgtcaagaactgagtcaaacaattcatgtagggcaccaagaaga
tggtatccaagttcagttgattgggtatctggaaatgctagacttctacttgacgctgcc
acttctctggacaagtccagcatgatggaagaagataacgagccaatggttccagcagat
gaagaccaatttgcctgtgttttatgtggtgagctttttgaagatttttatagtcaagag
ttgggtaagtggatgttcaaaggagcaatgcatatcaccatcccatcagtgggtagtgag
gtaggaagcacaaatgaacgagttgctataggacccattgtgcacataagttgcttcact
gaaagttcaatacacgagttgggactggcaactgatattaagaaggaaacggatgtatga
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