Cucurbita pepo subsp. pepo (vegetable marrow): 111790570
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Entry
111790570 CDS
T05351
Name
(RefSeq) DNA repair protein RAD50
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03440
Homologous recombination
cpep03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
111790570
03450 Non-homologous end-joining
111790570
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cpep03032
]
111790570
03400 DNA repair and recombination proteins [BR:
cpep03400
]
111790570
DNA replication proteins [BR:
cpep03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
111790570
DNA repair and recombination proteins [BR:
cpep03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
111790570
BRCA1-C complex
111790570
NHEJ (non-homologous end-joining)
MRX complex
111790570
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SMC_N
AAA_15
AAA_21
Rad50_zn_hook
SbcC_Walker_B
AAA_29
ABC_tran
AAA_16
AAA_13
AAA_22
Motif
Other DBs
NCBI-GeneID:
111790570
NCBI-ProteinID:
XP_023527295
LinkDB
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Position
LG03:12390767..12402633
Genome browser
AA seq
1316 aa
AA seq
DB search
MSTVDKMLIKGIRSFDPENRNVITFFKPLTLIVGPNGAGKTTIIECLKLSCTGELPPNAR
SGHSFIHDPKVAGETETKGQIKLRFKTAAGKDVVCIRSFQLTQKASKMEYKAIESVLQTI
NPHTGEKVCLSYRCADMDREIPALMGVSKAILENVIFVHQDEANWPLQDPSTLKKKFDDI
FSATRYTKALEVIKKLHKDQAHEIKTYKLKLENLQTLKDAAYKLRESISQDQEKTESVKS
QMQELEKNIQDVDAKIHHAETLLKDVRKLQDQISTKTAERSTLFKEQQKQYAALAEENED
TDEELKEWKTKFEERIAILESKVSKLEREMNDMETKSSFLKQTINEYIWEISKLQTEAEV
HMSLKNERDSTIKELFARHNLGSVPNTPFSDEVASNLTNRIKSRLVDLDKDMQDKRVSND
VELKTAWDCYMGANDRWKNIEAQKHAKADIKRGIVKRIEAKESERDSFELQISHVDLSHI
DEREKNMQIEVERKTNQLAEREFESTIRQKQSDLYGIEQKIKAVNREKDIMAGDSEDRVK
LALKKAELDNHKKKHRKIIDEYKDKIRGVLKGRLPPEKDLKKEITQALRAVGMEYDDLNS
KSREAEKDVNMLQMKIQEVNNNLSRYQKEMESRKRFVESKLQSLDPHSFSVDLYLKALEG
AKEKKDVQKSKYNIADGMRQMFDPFERVARAHHVCPCCERPFTAEEEDEFVKKQRVKAAS
SAEHMKVLAMESSSADSHFQHLDKLRMVFEEYVKLSNETIPKAEKELHQLNEELDEKSQA
LDDVVGVLAQVKADRDAVENLVQPIDTADRLYQEIQTWQKQVDDLVYKLDFRGKGVKTME
EIQSELNALQNTKDGLHNELEKLRDEQRYMENDLSNIQIRWHTLREEKVKAANTLRDVRK
AEEELDRLTEERGQVDLDEKHLEEALIPLSKEKDKLLNDYNELKDKLNHEYEELGDKKRK
FQQEVETLLRTTSKIKEYLDLKKGERLKELQEKKAQAESQLQGCDSRKQEILVELNKSKD
LMRNQDQLRRNIEDNLNYRKTKAEVDELARDIESLEEQILKIGGVSTVEAELGKLSQDRE
RLLSELNRFHGTMSVYQSNISKNKIDLKHAQYKDIDKRYFDQLIQLKTTEMANKDLDRYY
NALDKALMRFHSMKMEEINKIIRELWQQTYRGQDIDYISIHSDSEGAGTRSYSYKVLMQT
GDAELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALL
RIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVTKDDLQHSIIESQEIFD
NT seq
3951 nt
NT seq
+upstream
nt +downstream
nt
atgagtacagtggacaagatgctgattaaaggtattcggagtttcgacccggaaaatagg
aacgtcatcaccttcttcaagcccttgactctgatcgttggccctaacggtgccgggaaa
actaccataattgaatgcttgaagctctcttgtaccggcgagttgcctcccaatgccagg
tctggccacagcttcattcacgacccgaaggttgcaggagagacagagacaaagggacaa
atcaagcttcggtttaagacagcggcaggtaaggatgtggtatgcataaggtcattccaa
cttactcagaaggcatcgaaaatggagtataaagcaatagaaagcgtgcttcagacgata
aacccacatactggcgagaaagtttgtctcagctatagatgtgcagacatggatagggag
attcctgctttaatgggtgtgtcaaaggctatcctggaaaatgtgatatttgttcaccaa
gatgaagctaactggccattgcaagatccttcaacattaaagaagaaatttgatgatatc
ttctctgctacaagatatacaaaggcattggaggtcataaagaagcttcacaaggatcag
gctcatgaaataaagacttacaaactaaagttggagaatcttcaaactttaaaagatgca
gcatataagctcagggaaagcatttctcaagatcaggaaaaaacagaatctgttaaaagt
caaatgcaggaactggagaagaacatccaagatgttgatgccaaaattcatcatgctgaa
acacttttgaaagatgtgcgaaaactacaggaccaaatatctactaagactgccgaaaga
agcactttatttaaggagcagcagaagcaatatgctgctctcgctgaggagaatgaagac
actgatgaagaattgaaggaatggaaaaccaagtttgaagaaagaattgctattttggag
tctaaagtaagcaagttggagagggagatgaatgacatggagacaaagagttcctttctt
aagcagacaattaatgaatatatatgggagataagcaagcttcaaacagaagccgaggtg
cacatgtcattgaagaatgaacgtgattctactattaaagaactttttgcaagacataat
cttggttctgtgccaaatactccctttagtgacgaagttgcatccaacctaaccaataga
ataaaatcaagactggtggaccttgacaaggatatgcaagataaaagggtttcaaatgat
gttgaacttaagacagcgtgggactgctacatgggtgcaaatgatcgatggaaaaatatc
gaggcccaaaaacatgctaaagctgacattaaaagaggaatcgtgaaaaggattgaagcg
aaggagagcgagcgagattcatttgaacttcaaatttctcatgttgatctttctcacatt
gatgaaagagaaaaaaatatgcaaattgaggtcgagagaaagacaaaccagcttgctgaa
agagaatttgaatcaacaatacgtcaaaagcaaagtgatctatatggtattgagcagaaa
atcaaggctgttaacagagaaaaggacattatggctggtgactctgaggacagagtaaaa
cttgctctcaagaaagcggagttagataatcataaaaagaagcacagaaagataatcgat
gagtacaaggacaaaattagaggagtgctgaaggggagattgcctccagagaaggatttg
aaaaaagaaatcactcaagcactcagggctgttggtatggagtatgatgacctaaattct
aaatctcgtgaagccgagaaggatgtgaatatgttgcagatgaaaatacaggaagttaat
aacaacctttccagatatcaaaaggaaatggagtcaagaaagagatttgttgaatccaaa
ctccagtccttggatccacactcttttagtgttgatttgtatctcaaggccttggaaggg
gctaaggagaaaaaagatgtgcaaaaaagcaagtacaatattgcagatggtatgcgtcaa
atgtttgatccatttgaaagagttgcccgtgctcatcatgtttgcccttgttgtgagcgc
cccttcacagcagaagaagaagatgaatttgttaaaaagcaaagagtgaaggctgcaagt
tctgctgagcatatgaaagtgcttgccatggagtcttccagcgccgactcccattttcag
catctggacaagctccgcatggtttttgaagaatatgtcaaacttagcaatgaaacaatt
cctaaagcagagaaagaacttcatcagcttaacgaagagctggatgaaaagtcacaggcc
cttgacgatgtggtgggcgtcttagctcaagtaaaggctgaccgggacgcagttgagaac
ttggtacaacctattgacactgccgacagactttaccaagaaattcaaacttggcaaaag
caagttgatgacttggtctacaagcttgattttcgagggaaaggtgtgaaaacaatggaa
gaaattcagtcagagctgaatgcattgcaaaacaccaaagatggtttacacaatgaacta
gagaagctaagggatgaacaaagatatatggaaaatgatttgtccaacattcagataagg
tggcacactcttagagaggaaaaagtgaaagctgccaatactttgcgtgacgttaggaag
gcagaagaagagttggaccgtctgactgaggaaagaggtcaagtcgatcttgatgagaag
catttggaagaagctcttatccctttgtcaaaggagaaagacaaactacttaacgactat
aatgaactaaaagataaacttaatcatgaatacgaggagctgggtgacaaaaagaggaaa
tttcagcaggaagtcgagacgcttcttagaacaacttcaaagattaaagagtaccttgat
ttaaagaaaggtgagaggctaaaagaactgcaggaaaagaaagcacaggctgaatctcag
cttcaaggttgtgacagtaggaagcaggaaatattggttgaattaaacaaaagtaaggac
ttgatgcggaatcaagatcaattaagaaggaacattgaggacaacttgaactacaggaaa
acaaaggctgaagtcgatgagcttgctcgtgatattgaatcactagaagagcaaatttta
aagatcggaggggtttcaaccgttgaggccgaactaggaaaactgtctcaggacagagag
aggctattgtctgagctaaacaggtttcatgggacaatgtctgtctatcaaagcaatatt
tcaaagaataaaattgatttgaagcatgcgcaatataaggacattgacaagcggtatttt
gatcagctaattcaacttaagacaactgagatggcaaacaaggacttggacagatattac
aatgcccttgacaaggcactcatgcgcttccacagcatgaaaatggaggaaataaataaa
attataagggagttgtggcaacaaacatataggggacaagatattgactatataagtatt
cactcagattctgagggtgcaggaactcgttcatatagctacaaggttctcatgcagacg
ggtgatgctgaactagaaatgagaggaaggtgcagtgctggtcaaaaggttcttgcctct
cttataattcgattagcattggctgaaacgttctgcctcaactgcggaatactcgctcta
gacgagccaaccaccaatctagatggtccaaatgccgaaagtcttgctgcagctcttcta
cgaatcatggaggacaggaaagggcaggagaactttcagctcatagtaattacacacgac
gagcgtttcgctcagctaattggtcagagacagcacgcagagaagtattatcgtgtgacg
aaagacgaccttcagcatagcataatagaaagccaggagatatttgattga
DBGET
integrated database retrieval system
