Cucurbita pepo subsp. pepo (vegetable marrow): 111790766
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Entry
111790766 CDS
T05351
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH1 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111790766
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpep03019
]
111790766
03012 Translation factors [BR:
cpep03012
]
111790766
Enzymes [BR:
cpep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
111790766
Messenger RNA biogenesis [BR:
cpep03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
111790766
Translation factors [BR:
cpep03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
111790766
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
nSTAND3
AAA_19
BEX
ATPase
NACHT
Motif
Other DBs
NCBI-GeneID:
111790766
NCBI-ProteinID:
XP_023527583
LinkDB
All DBs
Position
LG03:complement(1624391..1636250)
Genome browser
AA seq
1033 aa
AA seq
DB search
MSLRTAVSSHSLLWKRPFLLPRLSVLRPVISAFAMSYRPNYQGGRRGSSSGGRRGGGRRG
GGGGSGGRGGGGRGEQRWWDPVWRAERLRQNAAEMEVLNEDEWWAKMDQMKRGGEQELII
KRNYSRRDQEILYDMAHQQGLYFHAYNKGKSLVVSKVPLPDYRADLDERHGSTQKEIRMT
TDIERRVGNLLDDLQGQGRDHSVSSTASAEGGKQTPTSINNTKPVYKLETDLAKEKLSAE
LKQKQEEMKGSDGLKTMLAFREKLPAFNVKSEFIKAMTENQVLVVSGETGCGKTTQLPQF
ILEEEISKLRGADCRIICTQPRRISAISVAARISSERGESLGETVGYQIRLEAKQSAQTR
LLFCTTGVLLRQLVQDPQLTGVSHLLVDEIHERGMNEDFLLIILRNLLPQRPDLRLILMS
ATINADLFSKYFANAPTLHIPGKTFSVTEFFLEDVLEKTRYNIKSEFENFEGNPNRRRRQ
QESKKDPLSELFEDVDIDAQYKAYSSSTRKSLEAWSGAQLDLSLVESTIEYICRHEGYGA
ILVFLTGWDDISKLLDKVKANSYLGDSGKFLILPLHGSMPTINQREIFDSPPPAKRKIVL
ATNIAESSITIDDVVYVIDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRVQPG
VCYRLYPKIIHDAMLQYQLPEILRTPLQELCLHIKSLQLGTAGSFLAQALQPPDPLAVQN
AIDLLKTIGALDDMEELTPLGRHLCSLPLDPNIGKMLLMGSIFQCLNPALTIAAALAHRD
PFILPINRKEEANDAKKSFSGDSCSDHVALLKAFEGWKDAKRNGAERSFCWENFLSPVTL
QMMDDMRMQFLDLLSDIGFVNKSRGPSAYNQYSHDLEMVCAVLCAGLYPNVVQCKRRGKR
TAFYTKEVGKVDIHPGSVNAGVHIFPLPYMIYSEKVKTTSIYIRDSTNISDYALLLFGGN
LVPTKTGDGIEMLGGYLHFSASKNVLDLIKKLRGELDKLLNRKIEEPSFDITTEGKGVVA
AAVELLHSQVVHH
NT seq
3102 nt
NT seq
+upstream
nt +downstream
nt
atgtccctccgaaccgccgtttctagtcactctctgctctggaagcgcccatttcttctg
cctcgactttctgtacttcggccagttatttcagcattcgcaatgtcatatcggcccaac
tatcaaggtggccgtcgtggcagctcatctggaggaagacgtggcggtggccgacgcggc
ggaggtggaggcagcggaggcagaggcggcggaggtagaggcgagcaacgttggtgggac
ccggtctggcgcgctgagcgtctgcgacaaaatgctgctgagatggaggttcttaatgaa
gatgaatggtgggctaagatggaccagatgaaaagaggaggggaacaagagttgataatt
aagcgtaattatagtcgaagagaccaagaaatcctttacgatatggctcatcagcagggt
ctctacttccatgcatataataaggggaaaagccttgtggttagtaaagttccattgcca
gattaccgggctgatctcgatgaacgacatgggtccacacaaaaggagattcgaatgact
acggatatagagaggagggttggaaatcttctggatgacttgcagggtcagggaagggat
cacagcgtttcttctactgcatcagctgaaggaggcaaacagactccaacttctataaat
aacacaaaacctgtctacaagttggagactgatttagcaaaggagaaacttagtgctgaa
cttaagcagaaacaggaagagatgaaaggaagcgatggcttaaaaacaatgctggcattt
agagaaaagcttcctgccttcaatgtaaaatctgaatttataaaagcaatgacagaaaac
caggtattggttgtttcaggagagacaggttgtggtaaaaccacacagctccctcaattt
attttggaggaggagatatcaaaacttcgtggtgctgattgtagaataatatgcacccaa
cctcggcgcatctctgctatttcagttgctgcacgtatatcctctgaaaggggagaaagt
cttggtgaaacagttggatatcaaatacgactggaagcaaaacaatcagcccagactcga
ctactattttgcaccactggagttctactccggcagttggttcaggacccacaattgact
ggtgttagccatttgcttgtggatgaaatacatgaaaggggcatgaatgaggatttttta
ttaataattctgcgcaaccttcttcctcagcggccagatttgcgtcttattttaatgagt
gccaccattaatgcagatttgttctccaaatactttgcgaatgccccaacactacacata
ccaggaaaaacattttctgtgacagagttttttttagaggatgtgctggagaaaactcgt
tataatatcaagtcagagtttgaaaactttgaaggaaatccaaatagaagaaggagacaa
caagaatccaagaaggatccgttatcagaattatttgaggatgttgatattgatgctcag
tacaaagcttatagttcatctacgagaaagtcacttgaagcctggtctggggcacaactt
gatttgagtctggtggaatcaactattgagtatatttgtcgccatgaaggttatggtgct
atacttgtatttcttactggttgggatgacatttctaaactactcgacaaagttaaagca
aacagttatcttggagattctggaaagttcttaatccttcctttacatggttccatgcca
accattaatcagcgagaaatatttgatagtcctccccccgccaaaagaaaaattgtgctg
gcaactaacattgctgagagtagtatcaccatagatgacgttgtctatgtcatagattgt
ggaaaagcaaaggaaacgagttatgatgctctgaacaaactcgcttgtctgctaccttca
tggatttccaaggcttcagcacaccagaggcgaggtcgtgctggtcgtgtgcaacctggt
gtttgttatagactctatccaaaaattatccacgacgcaatgcttcagtatcagttacct
gaaattctgagaactcctttacaagaactttgtctgcatatcaaaagtttgcagctagga
actgctgggtcatttttggcacaggcattacagccaccagaccctcttgctgtccagaat
gccattgaccttctcaaaacaattggtgctttagatgatatggaggagcttacaccactg
ggtcgtcatctttgctcattacctctggacccaaatatagggaagatgcttctcatgggt
tctatatttcaatgcctgaatcctgccttgaccattgctgctgctctggctcaccgcgat
ccatttattttgcccattaataggaaagaggaagcaaatgatgcaaagaaatcattttcg
ggtgattcttgcagtgaccacgtcgcccttcttaaagcctttgaaggatggaaggatgca
aaaagaaatggagctgaaagatcgttctgctgggaaaacttcttatctccagttaccttg
cagatgatggatgacatgagaatgcagtttctagatctattatctgatattggctttgtg
aacaagtccaggggtccaagtgcatacaaccaatacagtcacgatttggagatggtgtgt
gcagtgctttgtgctggactataccctaatgtcgtacaatgtaaaagaagaggaaagagg
acagccttctatactaaggaagttgggaaagtggatattcatcctggatctgtcaatgca
ggggttcatatcttccctctgccttacatgatttacagcgagaaggtcaaaacaactagt
atatacattagagactctaccaatatatcagattatgccctgttgttgtttggtggtaat
cttgtacctaccaaaactggagatggcattgaaatgctcggtggctacctccatttctct
gcttcaaagaatgttttagatttaataaagaaattgcgcggggaacttgacaagcttttg
aataggaagatcgaggagccgagttttgacattactacagaaggaaagggagtggtggca
gctgcagtcgagttactgcacagtcaagttgtacatcattaa
DBGET
integrated database retrieval system
