Cucurbita pepo subsp. pepo (vegetable marrow): 111790904
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Entry
111790904 CDS
T05351
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 38
KO
K18655
ATP-dependent RNA helicase DDX19/DBP5 [EC:
5.6.2.7
]
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03013
Nucleocytoplasmic transport
cpep03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
111790904
03015 mRNA surveillance pathway
111790904
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpep03019
]
111790904
Enzymes [BR:
cpep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
111790904
Messenger RNA biogenesis [BR:
cpep03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
111790904
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Motif
Other DBs
NCBI-GeneID:
111790904
NCBI-ProteinID:
XP_023527796
LinkDB
All DBs
Position
LG03:complement(1091576..1094708)
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AA seq
505 aa
AA seq
DB search
MADPAAPDSTTSNASTAAAAVTATTPPVVTPVPKRAWGDEEDDDVGDAGDSSSAPSEYME
SLKIQDEKTLEEPEDSNITAVTTGDTPYSSASTFEDLNLSPEILKGLYVEMKFQKPSKIQ
AISLPMILTPPYKDLIAQAHNGSGKTTCFVLGMLSRVDVNLKAPQAFCICPTRELAMQNI
EVLKKMGKYTGITSECAVPADSANYVPMSKRPPITAQVVIGTPGTIKKWMSSRKLGVSCV
KILVFDEADHMLSEDGFRDDSLRIMRDIEKSSPHCQVLLFSATFDETVKNFVSRVVKDYN
QLFVKKEELSLEGVKQYKVICPYELAKIRIIKDRIFELGEKLGQTIIFVRTRNSASMLHK
ALVDYGYDVTTIQGALTTEDRDKIIKEFKDGLTKVLISTDLLSRGFDQQQVNLVINYDLP
LKYESSSEAMKFRSSSQSEPNYEVYLHRIGRAGRFGRKGAVFNLLCGDVEIMRMDKIQNH
FNSEVTEVRDSDEDIQAALKTAGLL
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atggcagatcccgcggctccagactctaccaccagcaacgcctctaccgccgccgccgcc
gttaccgccactaccccacccgtagttacaccagttcccaaacgtgcttggggcgatgaa
gaagacgatgatgtaggcgatgctggagattcatcctctgcgccttccgagtacatggaa
tctcttaaaatccaagacgaaaaaactcttgaagaacccgaagactctaacatcacagcg
gtgacaactggtgatactccatattcatcagccagtacttttgaggatctgaatctatct
ccagagattttgaaggggttgtatgttgagatgaaattccaaaagccaagtaaaattcaa
gctataagtctacctatgatcttgactcctccgtacaaagatttaatagctcaagcacac
aatggttctggaaaaactacttgttttgtgcttgggatgttgagtcgcgttgatgtgaac
ttgaaggctcctcaggcattttgcatatgtcctacaagggagttagccatgcagaatatt
gaagttcttaagaaaatgggaaaatacactgggataacttcagagtgtgcagttcctgcc
gacagtgctaactatgtacctatgtcaaagcgaccaccaataactgcacaagttgtgatt
ggaactcctggcacaataaagaaatggatgtcatcgaggaagctgggcgtaagttgcgtg
aagattcttgtttttgatgaggctgatcatatgcttagcgaggatggctttagggatgat
tcgttgagaatcatgagggacattgagaaaagtagccctcattgccaggtgcttctgttc
tctgctacattcgatgagactgttaaaaactttgtctctagggttgtcaaagactacaac
caactttttgttaagaaggaagaactatccttggagggtgtgaagcaatacaaggtgata
tgtccatatgaattagcaaaaattcggatcataaaagatagaatttttgaacttggagag
aaattgggtcagacaattatatttgtgcgcacaagaaacagtgcaagcatgttacataag
gcactggttgattatggttatgatgtgactaccattcaaggggcactgacgactgaagat
agagacaaaataataaaagagtttaaggatggtttgaccaaagttctcatttcgactgac
cttctatctcgagggtttgaccagcaacaggtcaatctagttatcaattatgatcttcct
ctgaaatatgaatcttcttcagaagcgatgaaattcagatcttcctcacaatctgagcct
aactatgaggtgtacctccatagaattggtcgggcaggtcgttttgggcgcaagggagct
gtgtttaacttgctctgtggtgatgtggagatcatgcgaatggacaaaattcagaaccat
tttaactctgaagtaacagaggttcgggactctgatgaggacattcaagcagccttgaaa
actgctggattgctttga
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