Cucurbita pepo subsp. pepo (vegetable marrow): 111791040
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Entry
111791040 CDS
T05351
Name
(RefSeq) DNA polymerase delta small subunit
KO
K02328
DNA polymerase delta subunit 2
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03030
DNA replication
cpep03410
Base excision repair
cpep03420
Nucleotide excision repair
cpep03430
Mismatch repair
cpep03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
111791040
03410 Base excision repair
111791040
03420 Nucleotide excision repair
111791040
03430 Mismatch repair
111791040
03440 Homologous recombination
111791040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cpep03032
]
111791040
03400 DNA repair and recombination proteins [BR:
cpep03400
]
111791040
DNA replication proteins [BR:
cpep03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase delta complex
111791040
DNA repair and recombination proteins [BR:
cpep03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DNA polymerase delta complex
111791040
MMR (mismatch excision repair)
DNA polymerase delta complex
111791040
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol_E_B
DNA_pol_D_N
Motif
Other DBs
NCBI-GeneID:
111791040
NCBI-ProteinID:
XP_023527988
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Position
LG03:complement(1984752..1989520)
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AA seq
438 aa
AA seq
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MEIDSQKNLLRKQCTYEILDEQYKIQKETYKGQQYSHIYFVRLHLMRTILHSLVSKWKPH
LPVRTVLELEEGKECVIVGTLYKHMKLKPTILDEYSKERSVTPLVKPHNFMHPDDYLVLE
DDSGRVKLSGAVLLPSVYATGIIVALHGKETCVGDFFVDDILEAGLPPQIERPLIPNEDK
YVVFVSGLSIGSSSSNPLQFQLLVDHITGHLGDEEEQGIAAQIVHVVIAGNSVEIPRGLL
NGQHLSAKDQTKLTEPLKELDILLNQLAAGLSVDIMPGPSDPANFSLPQQPLHRCLFPGS
SAYNTFRSCTNPHCFELDNFRFLGTSGQNADDLDKYSEAKDKLEFMERTLRWRHLAPTAP
NTLGCYPFTDRDPFLIESCPHVYFIGNQDKFDTRLIKGSEGQMVRLIAIPRFCENGTAVM
LNLRNLDCHVLSFETEFS
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atggaaatcgattcacagaagaatctcctgcgcaagcagtgtacctatgaaatattggat
gagcagtacaagattcagaaggagacgtacaagggccagcaatacagtcatatttacttt
gttcgactccacttgatgagaacgatacttcattcacttgtctccaagtggaaaccccat
ttacctgttcgtactgtattggagttggaggaaggcaaggaatgtgtcatcgttggaacc
ctctacaagcacatgaaacttaaacctaccattctggacgagtattcaaaggagagatct
gtcaccccactggttaagccacacaactttatgcatccagatgattatctagtcttggaa
gatgacagtgggagagtaaagctttctggggctgtgcttttaccttctgtatatgctaca
gggattattgttgcattgcatggaaaggaaacctgcgttggtgacttttttgttgatgac
atcctagaagctggcttgccacctcagatagagcggcctctcataccaaacgaagataaa
tacgtggtttttgtgtcgggcctaagtattgggagcagtagctctaatcctctacagttt
cagctccttgttgatcatataacaggacatttaggggatgaggaggaacaagggattgcg
gctcaaatagttcatgttgttattgctgggaattctgttgaaattcctcgtggactttta
aatgggcagcacctatctgctaaggaccaaacgaagctgacagaaccacttaaagagtta
gatatcctgttgaatcagcttgctgcaggtttatctgtggacatcatgccgggtcccagt
gacccagccaatttttcgttaccccagcagcctttgcacagatgcctttttcctggatcg
tcagcttataacactttcagatcttgcactaaccctcattgttttgagcttgataatttc
aggtttcttggaacatcgggccagaatgcagacgatcttgacaagtattccgaagctaaa
gataaacttgaatttatggagaggaccttgagatggaggcatctagcaccaactgctcca
aatactctcggttgttaccctttcaccgatcgagatcctttcctgattgaaagctgtcct
catgtctattttattggcaatcaggacaagtttgatactcgcttaataaagggttctgaa
ggacagatggtaagactcatcgcaattccaagattttgcgagaatgggactgccgtaatg
cttaatttgagaaatctcgactgccacgttctgagtttcgagactgaattcagctga
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