Cucurbita pepo subsp. pepo (vegetable marrow): 111791068
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Entry
111791068 CDS
T05351
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 50 isoform X1
KO
K13179
ATP-dependent RNA helicase DDX18/HAS1 [EC:
5.6.2.7
]
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cpep03041
]
111791068
03009 Ribosome biogenesis [BR:
cpep03009
]
111791068
Enzymes [BR:
cpep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
111791068
Spliceosome [BR:
cpep03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
111791068
Ribosome biogenesis [BR:
cpep03009
]
Eukaryotic type
90S particles
Helicases
111791068
Pre-60S particles
111791068
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SNF2-rel_dom
Cas3-like_C_2
CMS1
Helicase_C_2
DUF7485
Motif
Other DBs
NCBI-GeneID:
111791068
NCBI-ProteinID:
XP_023528025
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All DBs
Position
LG03:10523807..10530318
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AA seq
649 aa
AA seq
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MARAPIHTPANFLTSRSLEPCYLRCYGCLRPPFLSQTLRPVPASKVVIVRGCVIAGYARK
SVDSDGFDKLTDDNDFTVYSSDELRYDGDVTVDNEVIKNSGTPRRISIGRLGRLKSQKVK
AIVMKGSRTKEEVKDDVRVPTTGNGSLHISDRLHSKVKTPGEKKKVNTLRNVERFSRSSE
LQDKDRHHRTAPGLSRSEQSVPAASATYFRGWGSRGPYDSEYELTQPKQQKFSSEKGFYS
RKSFKDLGCTEYMIESLRRQNFLRPSQIQAKAFASVIEGKSCIISDQSGSGKTLAYLAPL
IQRLRQEELQGLQKSSPQSPQIVIIVPTAELASQVLSNCRSISKFGVPFRSMVVTGGFRQ
KTQLDNLQEGVDVLIATPGRLMLLINEGFLQLSNLRCAVMDEVDILFNDEDFEVALQTLM
KSAPVNAQYLFVTATLPVDIYNTLVEKFPDCEVIMGPGVHRISPSLEEVLVDCSGEDEQN
KTPDAAFLNKKDALLQIAEGTPVLKTIVFCNKIETCRRVENALQRFDKKGSRLQVFPFHA
ALARDSRLANMEAFTNPHSNQVSKFLVCTDRASRGIDFPNVDHVILFDFPRDPSEYVRRV
GRTARGATGKGKAFIFVVGKQVSLARRIIERNRKGHPLHDVPSAYELTY
NT seq
1950 nt
NT seq
+upstream
nt +downstream
nt
atggccagagctcccattcacactccggccaactttctgacctctcgaagtctcgaaccg
tgctacttgagatgctatggctgcctccgcccgccatttttgagccagacgctacggcca
gttcccgcgagcaaggtggtgattgttcgtggttgtgtaatcgccggttacgctcggaag
tcggtggattctgatggatttgataagctcactgatgataatgacttcaccgtttattcg
tcggacgaattgcgttacgatggagatgtgacagttgataatgaagttattaagaattca
ggaacaccgagaaggatatcaattggaagacttggaagattgaaatctcagaaagttaag
gcaattgtgatgaaaggttctaggacaaaggaagaagtaaaagatgatgttcgtgtaccg
actactggaaatggttcactgcatatatccgatcgtctgcactctaaagttaaaactcca
ggagaaaagaagaaggtaaataccttaagaaatgtagaaagattttcaagatcatctgaa
ctgcaagataaagatcgacatcacagaactgcccccggtttatcaagatccgagcaatca
gtcccggcagcttctgccacttacttcagaggatggggctctagagggccctacgattcg
gagtatgaattaacccaacctaaacaacagaagttttcctcagagaagggcttttacagc
cgaaagtcatttaaagatcttgggtgcactgaatatatgattgaatcattgaggaggcag
aatttcctacggccttcacagattcaggccaaggcatttgcatcagttattgaaggaaaa
agttgtatcatttctgatcaaagtggatctggtaagacattagcatatcttgcaccatta
atccagcgtctgaggcaggaagaacttcaaggacttcaaaagtcttctccacaaagtccc
caaattgttatcattgtgccgactgcagaattggcttctcaggtcttaagtaattgccga
tccatttcaaaatttggggtgccatttaggtcaatggttgtgacaggcggtttccggcag
aaaactcaacttgataatctacaagaaggtgttgatgttctaatagcaactcctggtcgt
ttgatgcttctaataaatgaaggcttcttgcagttatcaaatctaagatgtgctgtaatg
gacgaggtagatatcctctttaatgatgaggattttgaagttgcattgcagactttaatg
aagtctgcacctgttaacgcacaatatctatttgtgactgcaactttacccgttgacata
tataatacattagtggaaaagtttcctgattgtgaagtgatcatgggacctggagttcac
cggataagtcctagtctggaagaggttcttgtagattgtagtggtgaagatgagcagaac
aagacaccggacgctgctttcttgaataagaaagacgctcttctgcagattgctgaagga
actccagtcttgaaaactattgttttctgtaacaagattgagacatgtagaagagttgaa
aatgcattgcaacgttttgataaaaaaggtagccgcttgcaagtttttccatttcatgct
gccctagcaagagactcacggcttgcaaatatggaggccttcaccaatcctcattcaaac
caagtatccaagttcttggtttgtacagatagggcatcacgtggaattgattttccaaat
gtggatcatgtcatactcttcgacttccctcgtgatcctagcgagtatgttcgccgtgtt
ggaagaactgctagaggtgctacaggaaaaggaaaagcattcattttcgtggtcggaaag
caggtatcgcttgcgcggaggataatcgaaagaaacaggaaaggtcatccgttgcatgat
gtgccatctgcttatgagctgacatactaa
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