Cucurbita pepo subsp. pepo (vegetable marrow): 111791126
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Entry
111791126 CDS
T05351
Name
(RefSeq) zinc finger CCCH domain-containing protein 41-like
KO
K13192
RNA-binding protein 26
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
cpep01009
]
111791126
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpep03019
]
111791126
03041 Spliceosome [BR:
cpep03041
]
111791126
Protein phosphatases and associated proteins [BR:
cpep01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
111791126
Messenger RNA biogenesis [BR:
cpep03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
111791126
Spliceosome [BR:
cpep03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
111791126
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
Nup35_RRM_2
RRM_Nup35
zf_CCCH_4
PHM7_cyt
RRM_PARP14_3
RNA_bind
zf-CCCH
Motif
Other DBs
NCBI-GeneID:
111791126
NCBI-ProteinID:
XP_023528107
LinkDB
All DBs
Position
LG03:3446396..3455126
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AA seq
890 aa
AA seq
DB search
MELKVSYPKLGISSSEYVSDPEEKDISDDEDDDRNHKHRRRETRSQSLERDTREHVLRPY
GKRSKPSENGRSIRDNDSQANEAWKSFNTPTLEKDIPGKFDKRRLGAVPGARLAGDFNQR
IRANQTFSGDLSSGRGRGRESGTWNQFDSRFSPVDIASQIVHRGPFPPSLFAGRGLPSVS
TAQTAPWNAFGLLPGIPNSGLETMHPIGLQGTLRPPINPPLNIGIPRQRCRDFEERGFCL
RGDMCPMEHGINRIVVEDVQSLSQFNLPLSLPNAHLMGKTTGSLPAVSTTSTTVMSGKGL
LGKNSKPGVGDDSLPFHGVYSGSGSATEADLYDPDQPLWNNNCPEKPNALSGMHSSKIDD
VESLMGDDPSDRNQVRKCDAADNGCSSRITATSGSQGTSSSVWGRVGSRNRQDVKGKLDP
VNSSGCLDNEVKEHNEVLTSVQGNSHQQKHMAQGDAHTEAGNLPHKALNDANAMRTMRKP
SQKALRTLFVNGIPLQSNKTETLLSHFKKYGEVIDIYIPANSQRAFVQFSKREEAEAALK
SPDAVMGNRFIKLWWANRDSIPDAGVGSNNGIHVPPRHIAAVSLLPLVVKGKNSVQVSTS
KGSVSHPLESSLAAPDHSHAFSSPKVSSPLQKKLENLEQLKEELRKKQEMLDMKRNDFRR
QLDKLEKQATGNKGETVVGFSAKRLKVGIEADASKLVTPKASDSGIALASPHTEASGEHV
ECPCPEPTTSIVQQESSKFEPVHPLSSETPFDVDGDKSGSCSTGFRVVPPLPVDFANEDV
IKKHFSSLGDVCTVELVSEDGDRISNASNNCSANVTFLTRHSAERAFKDGKSWQGQDLKL
IWLSGSEGEDHDGALSDDASRDADMEPESEPESILLKEETPYHTESQNST
NT seq
2673 nt
NT seq
+upstream
nt +downstream
nt
atggaactgaaagtttcatatcctaagctgggcatttcttcctctgaatatgtaagtgat
cccgaggaaaaggatattagtgatgacgaagatgatgatcgaaaccataagcataggagg
cgggagacacgctctcagtctttggaaagagatacacgtgaacatgttttgaggccatat
ggtaagcgtagtaaaccatctgaaaatggacgtagtattagggacaacgattctcaagcc
aatgaagcttggaagtccttcaatactcccactcttgagaaagacatacctgggaaattt
gataaaagacgcttgggtgcagtgccaggagctcgactggctggggatttcaaccaaagg
atcagggcaaaccagacgttttctggtgacctaagttctggtagaggaagaggaagggag
tctggcacttggaaccagtttgattcaagatttagtcctgttgatattgcttcccaaatt
gttcaccgtgggccttttcctcctagtctatttgctggaaggggtttaccaagtgtttct
actgcacaaactgcaccatggaatgcatttggattactaccaggaattccaaatagtggg
ctagaaacgatgcaccccattggtttgcagggaacacttagacctccaatcaaccctcct
ctgaacataggcatacctcgccagagatgtagagattttgaggagcgtggattttgcctt
agaggagatatgtgtcctatggagcatggtattaaccgcatcgtagttgaagatgtccag
agtctttctcaatttaaccttcctctgtcgcttccaaatgcacacctaatggggaaaact
actggatctctgcctgcagttagcacaacttctacgacagtaatgagcggcaaaggattg
cttggaaaaaatagcaagcctggtgtaggagatgattcattgccctttcatggtgtatat
tcaggttctggtagtgcaactgaagctgacttgtatgaccctgatcaacccctatggaac
aacaattgtcctgagaaaccaaatgcactctcaggcatgcattcatcaaagattgatgat
gttgaatccttgatgggagatgatccttctgatagaaatcaggttaggaaatgtgatgct
gctgataatggatgctctagtagaattactgcaacaagtggttcacagggtactagttct
tctgtctggggtagagttgggtcgaggaatagacaagatgtgaaagggaaacttgatcca
gtaaattcctctggttgtcttgataatgaagtgaaggaacacaatgaggtactgactagt
gttcaaggaaattctcaccaacaaaagcacatggctcagggtgatgctcacactgaagca
ggaaatttacctcacaaggcactgaatgatgccaatgccatgcgtactatgcgcaaacca
tctcagaaagcattacgtactttgtttgtcaatgggattccactacaaagcaacaaaaca
gagacacttctttctcattttaaaaaatatggtgaggtcattgacatctatattccagca
aatagtcaacgtgcttttgttcagttctcaaaaagggaagaggcagaagctgctcttaag
tcacctgatgctgttatgggaaaccgttttatcaaactttggtgggccaatcgtgacagc
attcctgatgctggtgtaggcagtaataatggtattcatgttcctccacgtcatattgca
gctgtttcacttcttccacttgttgtcaaaggaaagaatagtgtccaggtttccacttca
aagggcagtgtttcccatccgttggaatcttctttagctgccccagatcactctcatgct
ttcagcagcccaaaggtttcttctcctttgcagaagaaattagagaatctggaacagtta
aaggaggaactccggaagaaacaagaaatgctagacatgaagcggaatgattttaggcgc
cagttagataaacttgaaaaacaagccacaggaaacaaaggcgaaacagtcgttgggttc
tccgcaaaacgacttaaagtgggaatagaggctgacgctagtaaacttgttactccaaag
gccagcgattctggcattgctttggcatcaccacacactgaggcgagtggggagcatgtg
gagtgcccttgtcctgagccaaccacatctattgtacaacaggaatcctcaaagtttgag
cctgttcatccattgtcatccgaaacaccttttgatgttgatggagataaatcagggagc
tgttctactggatttagagttgttcctcctttaccagtcgactttgccaatgaggatgtg
ataaagaaacatttctcatcgttgggtgatgtttgtacggtggagctagtttcggaagat
ggcgatcggatttcaaacgcatctaacaactgctcagctaatgtcacttttttaacccgt
cattcagctgaaagagcattcaaagatggcaaatcctggcaaggtcaagacttgaagtta
atatggttatctggtagtgaaggtgaagaccacgatggcgctttgtccgacgacgcatct
cgagatgcagacatggagcctgaaagtgaaccagaaagcatccttttgaaggaggaaacc
ccatatcatacagaatcccagaattcaacatga
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