Cucurbita pepo subsp. pepo (vegetable marrow): 111791319
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Entry
111791319 CDS
T05351
Name
(RefSeq) WD-40 repeat-containing protein MSI1-like
KO
K10752
histone-binding protein RBBP4
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03082
ATP-dependent chromatin remodeling
cpep03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
111791319
03083 Polycomb repressive complex
111791319
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cpep03036
]
111791319
Chromosome and associated proteins [BR:
cpep03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
111791319
Histone modification proteins
HAT complexes
HATB complex
111791319
HDAC complexes
Sin3A-HDAC complex
111791319
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
111791319
PRC2.2
111791319
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
111791319
Heterochromatin formation proteins
Other heterochromatin formation proteins
111791319
Chromatin remodeling factors
NuRD complex
111791319
NuRF complex
111791319
NuRF complex (fruit fly)
111791319
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
CAF1C_H4-bd
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EIPR1
Beta-prop_RIG_2nd
WD40_WDHD1_1st
Beta-prop_EML_2
WDR55
Beta-prop_EML
WD40_MABP1-WDR62_2nd
WD40_RFWD3
Beta-prop_WDR75_1st
Beta-prop_WDR90_POC16_2nd
EIF3I
ANAPC4_WD40
MIOS_WD40
Beta-prop_RIG_1st
Beta-prop_HPS5
WD40_MABP1-WDR62_1st
Beta-prop_NUP159_NUP214
Motif
Other DBs
NCBI-GeneID:
111791319
NCBI-ProteinID:
XP_023528376
LinkDB
All DBs
Position
LG03:complement(12588894..12592373)
Genome browser
AA seq
427 aa
AA seq
DB search
MKKTMEKGDEEIRGKTNERLVNEEYKIWKKNTPFLYDLIITHALEWPSLTVEWLPDRDEP
PGKDYSVQKMILGTHSFDNKPNYLMVAQVQLSLENSENDARHYRDDRASAGGFGCANGKV
QIIQHINHDGEVNRARYMPQNPFIIATKTVSAEVLVFDYSKHPSKPPLDGTCNPDLRLRG
HKSEGYGLSWNKFKQGHLLSGSEDSHICLWDINATPDNKTLEAMQIFKGHEGVVGDVAWH
MGHEYLFGSVGDDRYLHVWDLRSPSANKPVQSVVAHQSEVNCLTFNPFNEWLVATGSTDK
MVKLFDLRKISSSLHTFDCHEEEVFQVGWHPKNETILASCCRGRRLMVWDLSRIEEEQTP
EDVEDGPPELLFIHGGHTNTISDFSWNPCEEWVVASVAEDNILQVWQMAENVYYGEDDLL
EEPPKLS
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgaagaagacaatggagaagggcgatgaagagatacgtggaaaaacgaacgagagactg
gtaaatgaggagtataagatttggaagaagaatactccatttctttacgatttgatcatc
actcatgccctagagtggccttcactcaccgtcgagtggttgccggaccgggatgagcct
ccgggaaaggattactccgttcagaagatgattttggggactcatagcttcgataataag
ccgaattacctcatggttgctcaggttcagctttcgcttgagaattcggagaacgatgcg
cgacattaccgtgacgatcgtgccagtgcgggtggctttgggtgtgcgaacggcaaggta
caaataatccagcatataaatcacgacggcgaagtcaatagagcccgttatatgcctcaa
aacccatttattattgccacaaagactgtcagcgctgaagtccttgtttttgactacagt
aaacacccatccaaaccacctctagatggtacatgtaatcctgacttgaggttgaggggt
cacaagtccgaaggttatggtttatcatggaacaagttcaagcagggccatttacttagt
ggctctgaggattcacatatttgtttatgggacattaatgctactccggataacaaaacc
ctcgaggctatgcaaatttttaagggtcatgaaggtgttgtgggagacgttgcctggcat
atggggcatgaatacttatttggttcagtcggtgatgatcgatatctacatgtatgggat
ctgcgaagtccttcagctaataagcctgtacagtctgtagttgctcatcaaagtgaggta
aattgcttgacattcaatcccttcaatgagtggttagtagccacagggtcaactgataag
atggttaagttgtttgatctacgtaagatcagctcatccctccatacctttgactgtcac
gaggaggaggtttttcaggtgggctggcatccaaagaacgaaacgatcttagcttcttgt
tgtcgtggaaggagactcatggtttgggaccttagcaggatcgaggaggagcagacaccg
gaggacgtagaagatgggccacccgaattgctgttcattcacggtggtcataccaataca
atatcagacttctcttggaatccctgtgaggagtgggtcgttgctagtgtagctgaagat
aacatactacaagtctggcagatggctgagaacgtctactatggtgaagatgatttgctt
gaggaacctccaaagctctcttag
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